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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| AddAdapters.class | 2023-05-22 19:17 | 20K | |
| AddAdapters.java | 2023-05-22 19:17 | 24K | |
| AdjustHomopolymers.class | 2023-05-22 19:17 | 13K | |
| AdjustHomopolymers.java | 2023-05-22 19:17 | 16K | |
| AssemblyStats2$Triple.class | 2023-05-22 19:17 | 2.0K | |
| AssemblyStats2.class | 2023-05-22 19:17 | 48K | |
| AssemblyStats2.java | 2023-05-22 19:17 | 67K | |
| AssemblyStatsWrapper.class | 2023-05-22 19:17 | 2.5K | |
| AssemblyStatsWrapper.java | 2023-05-22 19:17 | 1.6K | |
| BBDuk$LoadThread.class | 2023-05-22 19:17 | 7.8K | |
| BBDuk$ProcessThread.class | 2023-05-22 19:17 | 46K | |
| BBDuk.class | 2023-05-22 19:17 | 73K | |
| BBDuk.java | 2023-05-22 19:17 | 183K | |
| BBDuk2$LoadThread.class | 2023-05-22 19:17 | 7.6K | |
| BBDuk2$ProcessThread.class | 2023-05-22 19:17 | 31K | |
| BBDuk2.class | 2023-05-22 19:17 | 62K | |
| BBDuk2.java | 2023-05-22 19:17 | 134K | |
| BBMask$MaskLowEntropyThread.class | 2023-05-22 19:17 | 1.6K | |
| BBMask$MaskRepeatThread.class | 2023-05-22 19:17 | 1.3K | |
| BBMask$MaskSamThread.class | 2023-05-22 19:17 | 633 | |
| BBMask.class | 2023-05-22 19:17 | 32K | |
| BBMask.java | 2023-05-22 19:17 | 36K | |
| BBMerge$MateThread.class | 2023-05-22 19:17 | 25K | |
| BBMerge.class | 2023-05-22 19:17 | 58K | |
| BBMerge.java | 2023-05-22 19:17 | 100K | |
| BBMergeOverlapper.class | 2023-05-22 19:17 | 19K | |
| BBMergeOverlapper.java | 2023-05-22 19:17 | 33K | |
| BBQC.class | 2023-05-22 19:17 | 32K | |
| BBQC.java | 2023-05-22 19:17 | 38K | |
| CalcTrueQuality$CountMatrixSet.class | 2023-05-22 19:17 | 12K | |
| CalcTrueQuality$GBMatrixSet.class | 2023-05-22 19:17 | 4.5K | |
| CalcTrueQuality$Worker.class | 2023-05-22 19:17 | 9.3K | |
| CalcTrueQuality.class | 2023-05-22 19:17 | 31K | |
| CalcTrueQuality.java | 2023-05-22 19:17 | 66K | |
| CalcUniqueness$Counter.class | 2023-05-22 19:17 | 3.2K | |
| CalcUniqueness.class | 2023-05-22 19:17 | 15K | |
| CalcUniqueness.java | 2023-05-22 19:17 | 20K | |
| CallPeaks$Peak.class | 2023-05-22 19:17 | 4.1K | |
| CallPeaks.class | 2023-05-22 19:17 | 26K | |
| CallPeaks.java | 2023-05-22 19:17 | 33K | |
| Consect.class | 2023-05-22 19:17 | 11K | |
| Consect.java | 2023-05-22 19:17 | 13K | |
| CorrelateBarcodes.class | 2023-05-22 19:17 | 13K | |
| CorrelateBarcodes.java | 2023-05-22 19:17 | 13K | |
| CountBarcodes.class | 2023-05-22 19:17 | 14K | |
| CountBarcodes.java | 2023-05-22 19:17 | 12K | |
| CountGC$1.class | 2023-05-22 19:17 | 375 | |
| CountGC.class | 2023-05-22 19:17 | 10K | |
| CountGC.java | 2023-05-22 19:17 | 11K | |
| CountUniqueness.class | 2023-05-22 19:17 | 4.9K | |
| CountUniqueness.java | 2023-05-22 19:17 | 3.1K | |
| CovStatsLine.class | 2023-05-22 19:17 | 5.0K | |
| CovStatsLine.java | 2023-05-22 19:17 | 5.5K | |
| CoveragePileup.class | 2023-05-22 19:17 | 56K | |
| CoveragePileup.java | 2023-05-22 19:17 | 76K | |
| CrossContaminate$Vessel.class | 2023-05-22 19:17 | 1.7K | |
| CrossContaminate.class | 2023-05-22 19:17 | 14K | |
| CrossContaminate.java | 2023-05-22 19:17 | 14K | |
| CutPrimers.class | 2023-05-22 19:17 | 8.5K | |
| CutPrimers.java | 2023-05-22 19:17 | 6.9K | |
| DecontaminateByNormalization.class | 2023-05-22 19:17 | 22K | |
| DecontaminateByNormalization.java | 2023-05-22 19:17 | 23K | |
| Dedupe$ClusterLengthComparator.class | 2023-05-22 19:17 | 1.2K | |
| Dedupe$ClusterThread.class | 2023-05-22 19:17 | 27K | |
| Dedupe$HashThread.class | 2023-05-22 19:17 | 20K | |
| Dedupe$MstThread.class | 2023-05-22 19:17 | 4.4K | |
| Dedupe$Overlap.class | 2023-05-22 19:17 | 16K | |
| Dedupe$Unit.class | 2023-05-22 19:17 | 38K | |
| Dedupe$UnitOffsetComparator.class | 2023-05-22 19:17 | 1.0K | |
| Dedupe.class | 2023-05-22 19:17 | 68K | |
| Dedupe.java | 2023-05-22 19:17 | 198K | |
| Dedupe2$ClusterLengthComparator.class | 2023-05-22 19:17 | 1.2K | |
| Dedupe2$ClusterThread.class | 2023-05-22 19:17 | 27K | |
| Dedupe2$HashThread.class | 2023-05-22 19:17 | 19K | |
| Dedupe2$MstThread.class | 2023-05-22 19:17 | 4.4K | |
| Dedupe2$Overlap.class | 2023-05-22 19:17 | 16K | |
| Dedupe2$Unit.class | 2023-05-22 19:17 | 36K | |
| Dedupe2$UnitOffsetComparator.class | 2023-05-22 19:17 | 1.0K | |
| Dedupe2.class | 2023-05-22 19:17 | 66K | |
| Dedupe2.java | 2023-05-22 19:17 | 192K | |
| DedupeByMapping$Quad.class | 2023-05-22 19:17 | 1.8K | |
| DedupeByMapping.class | 2023-05-22 19:17 | 13K | |
| DedupeByMapping.java | 2023-05-22 19:17 | 13K | |
| DedupeProtein$ClusterLengthComparator.class | 2023-05-22 19:17 | 1.3K | |
| DedupeProtein$ClusterThread.class | 2023-05-22 19:17 | 21K | |
| DedupeProtein$HashThread.class | 2023-05-22 19:17 | 19K | |
| DedupeProtein$MstThread.class | 2023-05-22 19:17 | 4.6K | |
| DedupeProtein$Overlap.class | 2023-05-22 19:17 | 14K | |
| DedupeProtein$Unit.class | 2023-05-22 19:17 | 27K | |
| DedupeProtein$UnitOffsetComparator.class | 2023-05-22 19:17 | 1.0K | |
| DedupeProtein.class | 2023-05-22 19:17 | 65K | |
| DedupeProtein.java | 2023-05-22 19:17 | 161K | |
| DemuxByName.class | 2023-05-22 19:17 | 19K | |
| DemuxByName.java | 2023-05-22 19:17 | 19K | |
| DemuxByName2.class | 2023-05-22 19:17 | 25K | |
| DemuxByName2.java | 2023-05-22 19:17 | 36K | |
| Difference.class | 2023-05-22 19:17 | 1.6K | |
| Difference.java | 2023-05-22 19:17 | 714 | |
| FakeReads.class | 2023-05-22 19:17 | 10K | |
| FakeReads.java | 2023-05-22 19:17 | 10K | |
| FilterByCoverage.class | 2023-05-22 19:17 | 16K | |
| FilterByCoverage.java | 2023-05-22 19:17 | 15K | |
| FilterBySequence$Code.class | 2023-05-22 19:17 | 1.7K | |
| FilterBySequence$LoadThread.class | 2023-05-22 19:17 | 3.2K | |
| FilterBySequence$ProcessThread.class | 2023-05-22 19:17 | 3.2K | |
| FilterBySequence.class | 2023-05-22 19:17 | 13K | |
| FilterBySequence.java | 2023-05-22 19:17 | 23K | |
| FilterReadsWithSubs.class | 2023-05-22 19:17 | 3.6K | |
| FilterReadsWithSubs.java | 2023-05-22 19:17 | 3.5K | |
| FindHiCJunctions.class | 2023-05-22 19:17 | 15K | |
| FindHiCJunctions.java | 2023-05-22 19:17 | 15K | |
| FindPrimers$ProcessThread.class | 2023-05-22 19:17 | 7.7K | |
| FindPrimers.class | 2023-05-22 19:17 | 11K | |
| FindPrimers.java | 2023-05-22 19:17 | 20K | |
| FindPrimers_old.class | 2023-05-22 19:17 | 9.8K | |
| FindPrimers_old.java | 2023-05-22 19:17 | 8.3K | |
| FindString.class | 2023-05-22 19:17 | 1.0K | |
| FindString.java | 2023-05-22 19:17 | 492 | |
| FungalRelease.class | 2023-05-22 19:17 | 12K | |
| FungalRelease.java | 2023-05-22 19:17 | 15K | |
| FuseSequence.class | 2023-05-22 19:17 | 7.3K | |
| FuseSequence.java | 2023-05-22 19:17 | 5.9K | |
| GatherKapaStats$KapaEntry.class | 2023-05-22 19:17 | 1.7K | |
| GatherKapaStats$Plate.class | 2023-05-22 19:17 | 3.9K | |
| GatherKapaStats$TagData.class | 2023-05-22 19:17 | 3.4K | |
| GatherKapaStats$Well.class | 2023-05-22 19:17 | 4.3K | |
| GatherKapaStats.class | 2023-05-22 19:17 | 15K | |
| GatherKapaStats.java | 2023-05-22 19:17 | 22K | |
| GetReads.class | 2023-05-22 19:17 | 11K | |
| GetReads.java | 2023-05-22 19:17 | 9.6K | |
| GradeMergedReads.class | 2023-05-22 19:17 | 8.5K | |
| GradeMergedReads.java | 2023-05-22 19:17 | 8.0K | |
| GreedyBarCodeFinder.class | 2023-05-22 19:17 | 3.4K | |
| GreedyBarCodeFinder.java | 2023-05-22 19:17 | 2.3K | |
| IdentityMatrix$ProcessThread.class | 2023-05-22 19:17 | 4.2K | |
| IdentityMatrix.class | 2023-05-22 19:17 | 10K | |
| IdentityMatrix.java | 2023-05-22 19:17 | 8.9K | |
| Info.class | 2023-05-22 19:17 | 5.6K | |
| Info.java | 2023-05-22 19:17 | 5.8K | |
| KExpand.class | 2023-05-22 19:17 | 20K | |
| KExpand.java | 2023-05-22 19:17 | 29K | |
| KeepBestCopy.class | 2023-05-22 19:17 | 9.7K | |
| KeepBestCopy.java | 2023-05-22 19:17 | 8.0K | |
| KmerCountExact$DumpKmersThread.class | 2023-05-22 19:17 | 897 | |
| KmerCountExact$MakeKhistThread.class | 2023-05-22 19:17 | 949 | |
| KmerCountExact.class | 2023-05-22 19:17 | 25K | |
| KmerCountExact.java | 2023-05-22 19:17 | 33K | |
| KmerCountMulti$ProcessThread.class | 2023-05-22 19:17 | 2.5K | |
| KmerCountMulti.class | 2023-05-22 19:17 | 12K | |
| KmerCountMulti.java | 2023-05-22 19:17 | 15K | |
| KmerCoverage$1.class | 2023-05-22 19:17 | 395 | |
| KmerCoverage$ProcessThread.class | 2023-05-22 19:17 | 7.7K | |
| KmerCoverage.class | 2023-05-22 19:17 | 28K | |
| KmerCoverage.java | 2023-05-22 19:17 | 38K | |
| KmerFilterSetMaker.class | 2023-05-22 19:17 | 11K | |
| KmerFilterSetMaker.java | 2023-05-22 19:17 | 13K | |
| KmerNormalize$1.class | 2023-05-22 19:17 | 399 | |
| KmerNormalize$ProcessThread.class | 2023-05-22 19:17 | 20K | |
| KmerNormalize.class | 2023-05-22 19:17 | 92K | |
| KmerNormalize.java | 2023-05-22 19:17 | 134K | |
| KmerSample.class | 2023-05-22 19:17 | 1.6K | |
| KmerSample.java | 2023-05-22 19:17 | 3.1K | |
| MakeChimeras.class | 2023-05-22 19:17 | 9.7K | |
| MakeChimeras.java | 2023-05-22 19:17 | 9.3K | |
| MakeContaminatedGenomes.class | 2023-05-22 19:17 | 10K | |
| MakeContaminatedGenomes.java | 2023-05-22 19:17 | 10K | |
| MakeLengthHistogram$1.class | 2023-05-22 19:17 | 423 | |
| MakeLengthHistogram.class | 2023-05-22 19:17 | 8.9K | |
| MakeLengthHistogram.java | 2023-05-22 19:17 | 7.5K | |
| MakePolymers.class | 2023-05-22 19:17 | 5.9K | |
| MakePolymers.java | 2023-05-22 19:17 | 4.8K | |
| MergeBarcodes.class | 2023-05-22 19:17 | 14K | |
| MergeBarcodes.java | 2023-05-22 19:17 | 14K | |
| MergeSam.class | 2023-05-22 19:17 | 5.9K | |
| MergeSam.java | 2023-05-22 19:17 | 5.4K | |
| MutateGenome$SmallVar.class | 2023-05-22 19:17 | 2.2K | |
| MutateGenome.class | 2023-05-22 19:17 | 22K | |
| MutateGenome.java | 2023-05-22 19:17 | 24K | |
| MutateGenome2$SmallVar.class | 2023-05-22 19:17 | 2.5K | |
| MutateGenome2.class | 2023-05-22 19:17 | 25K | |
| MutateGenome2.java | 2023-05-22 19:17 | 29K | |
| Orf.class | 2023-05-22 19:17 | 3.4K | |
| Orf.java | 2023-05-22 19:17 | 2.5K | |
| PartitionReads.class | 2023-05-22 19:17 | 11K | |
| PartitionReads.java | 2023-05-22 19:17 | 14K | |
| PhylipToFasta.class | 2023-05-22 19:17 | 5.7K | |
| PhylipToFasta.java | 2023-05-22 19:17 | 4.7K | |
| RQCFilter2.class | 2023-05-22 19:17 | 97K | |
| RQCFilter2.java | 2023-05-22 19:17 | 140K | |
| RQCFilterStats.class | 2023-05-22 19:17 | 7.8K | |
| RQCFilterStats.java | 2023-05-22 19:17 | 8.3K | |
| RandomGenome.class | 2023-05-22 19:17 | 7.3K | |
| RandomGenome.java | 2023-05-22 19:17 | 6.2K | |
| ReadKmerDepthDistribution$1.class | 2023-05-22 19:17 | 447 | |
| ReadKmerDepthDistribution$ProcessThread.class | 2023-05-22 19:17 | 5.4K | |
| ReadKmerDepthDistribution.class | 2023-05-22 19:17 | 29K | |
| ReadKmerDepthDistribution.java | 2023-05-22 19:17 | 35K | |
| RedirectTest.class | 2023-05-22 19:17 | 2.8K | |
| RedirectTest.java | 2023-05-22 19:17 | 1.7K | |
| ReformatReads.class | 2023-05-22 19:17 | 46K | |
| ReformatReads.java | 2023-05-22 19:17 | 56K | |
| RemapQuality.class | 2023-05-22 19:17 | 2.3K | |
| RemapQuality.java | 2023-05-22 19:17 | 2.6K | |
| RemoveBadBarcodes.class | 2023-05-22 19:17 | 2.4K | |
| RemoveBadBarcodes.java | 2023-05-22 19:17 | 1.9K | |
| RenameReads.class | 2023-05-22 19:17 | 12K | |
| RenameReads.java | 2023-05-22 19:17 | 11K | |
| ReplaceHeaders.class | 2023-05-22 19:17 | 11K | |
| ReplaceHeaders.java | 2023-05-22 19:17 | 15K | |
| RepresentativeSet$Edge.class | 2023-05-22 19:17 | 2.8K | |
| RepresentativeSet$Node.class | 2023-05-22 19:17 | 2.6K | |
| RepresentativeSet.class | 2023-05-22 19:17 | 14K | |
| RepresentativeSet.java | 2023-05-22 19:17 | 16K | |
| SamToEst$1.class | 2023-05-22 19:17 | 379 | |
| SamToEst$EST.class | 2023-05-22 19:17 | 2.4K | |
| SamToEst.class | 2023-05-22 19:17 | 12K | |
| SamToEst.java | 2023-05-22 19:17 | 15K | |
| Seal$LoadThread.class | 2023-05-22 19:17 | 6.6K | |
| Seal$ProcessThread.class | 2023-05-22 19:17 | 24K | |
| Seal.class | 2023-05-22 19:17 | 54K | |
| Seal.java | 2023-05-22 19:17 | 107K | |
| SealRefInfo.class | 2023-05-22 19:17 | 8.5K | |
| SealRefInfo.java | 2023-05-22 19:17 | 9.1K | |
| Shred.class | 2023-05-22 19:17 | 12K | |
| Shred.java | 2023-05-22 19:17 | 12K | |
| SmallKmerFrequency$CountComparator.class | 2023-05-22 19:17 | 1.0K | |
| SmallKmerFrequency$Kmer.class | 2023-05-22 19:17 | 1.0K | |
| SmallKmerFrequency$NumComparator.class | 2023-05-22 19:17 | 1.0K | |
| SmallKmerFrequency.class | 2023-05-22 19:17 | 5.4K | |
| SmallKmerFrequency.java | 2023-05-22 19:17 | 5.3K | |
| SplitNexteraLMP.class | 2023-05-22 19:17 | 21K | |
| SplitNexteraLMP.java | 2023-05-22 19:17 | 21K | |
| SplitPairsAndSingles.class | 2023-05-22 19:17 | 20K | |
| SplitPairsAndSingles.java | 2023-05-22 19:17 | 25K | |
| SplitSam4Way.class | 2023-05-22 19:17 | 4.0K | |
| SplitSam4Way.java | 2023-05-22 19:17 | 4.0K | |
| SplitSam6Way.class | 2023-05-22 19:17 | 4.2K | |
| SplitSam6Way.java | 2023-05-22 19:17 | 4.7K | |
| SplitSamFile.class | 2023-05-22 19:17 | 2.8K | |
| SplitSamFile.java | 2023-05-22 19:17 | 2.3K | |
| StringCount.class | 2023-05-22 19:17 | 1.6K | |
| StringCount.java | 2023-05-22 19:17 | 1.0K | |
| SynthMDA.class | 2023-05-22 19:17 | 12K | |
| SynthMDA.java | 2023-05-22 19:17 | 12K | |
| TestFilesystem$WriteThread.class | 2023-05-22 19:17 | 2.3K | |
| TestFilesystem.class | 2023-05-22 19:17 | 8.9K | |
| TestFilesystem.java | 2023-05-22 19:17 | 8.2K | |
| TestFormat$Barcode.class | 2023-05-22 19:17 | 1.7K | |
| TestFormat$TestThread.class | 2023-05-22 19:17 | 10K | |
| TestFormat.class | 2023-05-22 19:17 | 32K | |
| TestFormat.java | 2023-05-22 19:17 | 38K | |
| TetramerFrequencies$Line.class | 2023-05-22 19:17 | 867 | |
| TetramerFrequencies$PrintThread.class | 2023-05-22 19:17 | 1.9K | |
| TetramerFrequencies.class | 2023-05-22 19:17 | 14K | |
| TetramerFrequencies.java | 2023-05-22 19:17 | 13K | |
| TranslateSixFrames.class | 2023-05-22 19:17 | 13K | |
| TranslateSixFrames.java | 2023-05-22 19:17 | 13K | |
| UnicodeToAscii.class | 2023-05-22 19:17 | 5.2K | |
| UnicodeToAscii.java | 2023-05-22 19:17 | 4.0K | |
| Unzip.class | 2023-05-22 19:17 | 6.5K | |
| Unzip.java | 2023-05-22 19:17 | 7.6K | |