| Name | Last modified | Size | Description | |
|---|---|---|---|---|
| Parent Directory | - | |||
| PF00225_full.blocks.txt | 2022-09-23 13:06 | 9.5M | ||
| PF00225_seed.blocks.txt | 2022-09-23 13:06 | 49K | ||
| README.autoAug | 2022-09-23 13:06 | 12K | ||
| SplicedAlignment.pm | 2022-09-23 13:06 | 12K | ||
| aa2nonred.pl | 2023-03-06 23:47 | 20K | ||
| add_name_to_gff3.pl | 2023-03-06 23:47 | 3.4K | ||
| aln2wig | 2023-03-06 23:47 | 21K | ||
| augustify.py | 2022-09-23 13:06 | 27K | ||
| augustus | 2023-03-06 23:47 | 2.3M | ||
| augustus2browser.pl | 2023-03-06 23:47 | 3.0K | ||
| augustus2gbrowse.pl | 2023-03-06 23:47 | 393 | ||
| autoAug.pl | 2023-03-06 23:47 | 53K | ||
| autoAugPred.pl | 2023-03-06 23:47 | 23K | ||
| autoAugTrain.pl | 2023-03-06 23:47 | 45K | ||
| bam2hints | 2023-03-06 23:47 | 48K | ||
| bam2wig | 2023-03-06 23:47 | 17K | ||
| bamToWig.py | 2022-09-23 13:06 | 13K | ||
| bedgraph2wig.pl | 2023-03-06 23:47 | 3.3K | ||
| blat2gbrowse.pl | 2023-03-06 23:47 | 4.6K | ||
| blat2hints.pl | 2023-03-06 23:47 | 32K | ||
| block2prfl.pl | 2023-03-06 23:47 | 11K | ||
| cegma2gff.pl | 2023-03-06 23:47 | 2.2K | ||
| checkParamArchive.pl | 2023-03-06 23:47 | 3.8K | ||
| checkUTR | 2022-09-23 13:06 | 1.1K | ||
| cleanDOSfasta.pl | 2023-03-06 23:47 | 539 | ||
| clusterAndSplitGenes.pl | 2023-03-06 23:47 | 7.4K | ||
| compare_masking.pl | 2023-03-06 23:47 | 1.6K | ||
| compileSpliceCands | 2023-03-06 23:47 | 26K | ||
| computeFlankingRegion.pl | 2023-03-06 23:47 | 2.3K | ||
| createAugustusJoblist.pl | 2023-03-06 23:47 | 7.3K | ||
| del_from_prfl.pl | 2023-03-06 23:47 | 3.2K | ||
| etraining | 2023-03-06 23:47 | 1.7M | ||
| evalCGP.pl | 2023-03-06 23:47 | 9.5K | ||
| eval_dualdecomp.pl | 2023-03-06 23:47 | 13K | ||
| eval_multi_gtf.pl | 2023-03-06 23:47 | 3.3K | ||
| executeTestCGP.py | 2022-09-23 13:06 | 28K | ||
| exonerate2hints.pl | 2023-03-06 23:47 | 3.0K | ||
| exoniphyDb2hints.pl | 2023-03-06 23:47 | 1.3K | ||
| extractAnno.py | 2022-09-23 13:06 | 4.5K | ||
| extractTranscriptEnds.pl | 2023-03-06 23:47 | 511 | ||
| fastBlockSearch | 2023-03-06 23:47 | 237K | ||
| filter-ppx.pl | 2023-03-06 23:47 | 450 | ||
| filterBam | 2023-03-06 23:47 | 248K | ||
| filterGenes.pl | 2023-03-06 23:47 | 854 | ||
| filterGenesIn.pl | 2023-03-06 23:47 | 1.0K | ||
| filterGenesIn_mRNAname.pl | 2023-03-06 23:47 | 2.8K | ||
| filterGenesOut_mRNAname.pl | 2023-03-06 23:47 | 1.7K | ||
| filterInFrameStopCodons.pl | 2023-03-06 23:47 | 1.1K | ||
| filterMaf.pl | 2023-03-06 23:47 | 2.9K | ||
| filterPSL.pl | 2023-03-06 23:47 | 17K | ||
| filterShrimp.pl | 2023-03-06 23:47 | 4.4K | ||
| filterSpliceHints.pl | 2023-03-06 23:47 | 2.0K | ||
| findGffNamesInFasta.pl | 2023-03-06 23:47 | 1.6K | ||
| findRepetitiveProtSeqs.py | 2022-09-23 13:06 | 4.2K | ||
| fix_in_frame_stop_codon_genes.py | 2022-09-23 13:06 | 38K | ||
| fix_joingenes_gtf.pl | 2023-03-06 23:47 | 3.6K | ||
| gbSmallDNA2gff.pl | 2023-03-06 23:47 | 3.0K | ||
| gbrowse.conf | 2022-09-23 13:06 | 7.9K | ||
| gbrowseold2gff3.pl | 2023-03-06 23:47 | 3.7K | ||
| getAnnoFasta.pl | 2023-03-06 23:47 | 7.5K | ||
| getAnnoFastaFromJoingenes.py | 2022-09-23 13:06 | 11K | ||
| getLinesMatching.pl | 2023-03-06 23:47 | 2.0K | ||
| getSeq | 2023-03-06 23:47 | 565K | ||
| get_loci_from_gb.pl | 2023-03-06 23:47 | 2.1K | ||
| gff2gbSmallDNA.pl | 2023-03-06 23:47 | 19K | ||
| gff2ps_mycustom | 2022-09-23 13:06 | 1.7K | ||
| gffGetmRNA.pl | 2023-03-06 23:47 | 4.0K | ||
| gp2othergp.pl | 2023-03-06 23:47 | 3.0K | ||
| gtf2aa.pl | 2023-03-06 23:47 | 6.9K | ||
| gtf2bed.pl | 2023-03-06 23:47 | 9.7K | ||
| gtf2gff.pl | 2023-03-06 23:47 | 15K | ||
| gth2gtf.pl | 2023-03-06 23:47 | 2.8K | ||
| hal2maf_split.pl | 2023-03-06 23:47 | 13K | ||
| helpMod.pm | 2022-09-23 13:06 | 9.6K | ||
| homGeneMapping | 2023-03-06 23:47 | 186K | ||
| joinPeptides.pl | 2023-03-06 23:47 | 1.4K | ||
| join_aug_pred.pl | 2023-03-06 23:47 | 8.9K | ||
| join_mult_hints.pl | 2023-03-06 23:47 | 2.6K | ||
| joingenes | 2023-03-06 23:47 | 176K | ||
| load2sqlitedb | 2023-03-06 23:47 | 93K | ||
| maf2conswig.pl | 2023-03-06 23:47 | 3.4K | ||
| makeMatchLists.pl | 2023-03-06 23:47 | 472 | ||
| makeUtrTrainingSet.pl | 2023-03-06 23:47 | 16K | ||
| maskNregions.pl | 2023-03-06 23:47 | 1.6K | ||
| merge_masking.pl | 2023-03-06 23:47 | 1.7K | ||
| moveParameters.pl | 2023-03-06 23:47 | 2.4K | ||
| msa2prfl.pl | 2023-03-06 23:47 | 20K | ||
| new_species.pl | 2023-03-06 23:47 | 7.5K | ||
| opt_init_and_term_probs.pl | 2023-03-06 23:47 | 6.9K | ||
| optimize_augustus.pl | 2023-03-06 23:47 | 83K | ||
| parseSim4Output.pl | 2023-03-06 23:47 | 3.5K | ||
| partition_gtf2gb.pl | 2023-03-06 23:47 | 17K | ||
| pasapolyA2hints.pl | 2023-03-06 23:47 | 2.1K | ||
| peptides2alternatives.pl | 2023-03-06 23:47 | 3.3K | ||
| peptides2hints.pl | 2023-03-06 23:47 | 6.6K | ||
| phastconsDB2hints.pl | 2023-03-06 23:47 | 2.7K | ||
| polyA2hints.pl | 2023-03-06 23:47 | 2.3K | ||
| pp_simScore | 2023-03-06 23:47 | 251K | ||
| prepareAlign | 2023-03-06 23:47 | 42K | ||
| prints2prfl.pl | 2023-03-06 23:47 | 10K | ||
| pslMap.pl | 2023-03-06 23:47 | 7.8K | ||
| randomSplit.pl | 2023-03-06 23:47 | 1.9K | ||
| rename_species.pl | 2023-03-06 23:47 | 1.9K | ||
| retroDB2hints.pl | 2023-03-06 23:47 | 1.9K | ||
| rmRedundantHints.pl | 2023-03-06 23:47 | 1.4K | ||
| runAllSim4.pl | 2023-03-06 23:47 | 727 | ||
| samMap.pl | 2023-03-06 23:47 | 4.9K | ||
| scipiogff2gff.pl | 2023-03-06 23:47 | 1.1K | ||
| setStopCodonFreqs.pl | 2023-03-06 23:47 | 2.2K | ||
| simpleFastaHeaders.pl | 2023-03-06 23:47 | 1.2K | ||
| simplifyFastaHeaders.pl | 2023-03-06 23:47 | 2.5K | ||
| splitMfasta.pl | 2023-03-06 23:47 | 2.1K | ||
| split_wiggle.pl | 2023-03-06 23:47 | 865 | ||
| stringtie2fa.py | 2022-09-23 13:06 | 5.8K | ||
| summarizeACGTcontent.pl | 2023-03-06 23:47 | 2.1K | ||
| transMap2hints.pl | 2023-03-06 23:47 | 19K | ||
| uniquePeptides.pl | 2023-03-06 23:47 | 1.9K | ||
| utrgff2gbrowse.pl | 2023-03-06 23:47 | 2.3K | ||
| utrrnaseq | 2023-03-06 23:47 | 211K | ||
| webserver-results.head | 2022-09-23 13:06 | 6.2K | ||
| webserver-results.tail | 2022-09-23 13:06 | 1.0K | ||
| weedMaf.pl | 2023-03-06 23:47 | 1.6K | ||
| wig2hints.pl | 2023-03-06 23:47 | 5.3K | ||
| wigchoose.pl | 2023-03-06 23:47 | 2.8K | ||
| writeResultsPage.pl | 2023-03-06 23:47 | 14K | ||
| yaml2gff.1.4.pl | 2023-03-06 23:47 | 9.8K | ||