Xf0 >dZddlmZGddeZdZdZdS)z5Parse Cluster Buster position frequency matrix files.)motifsceZdZdZdZdS)RecordzClass to store the information in a Cluster Buster matrix table. The record inherits from a list containing the individual motifs. c@dd|DS)zBReturn a string representation of the motifs in the Record object. c34K|]}t|VdS)N)str).0motifs 8lib/python3.11/site-packages/Bio/motifs/clusterbuster.py z!Record.__str__..s(66U666666)join)selfs r __str__zRecord.__str__s#yy66666666rN)__name__ __module__ __qualname____doc__rrr rr s- 77777rrcvd}t}ggggdd}|D]}|}|r|dra|dkr2tjd}||_|||dd}ggggd|dz }|d r|}t|d krfd tgd|Dtjd}||_|||S) zRead motifs in Cluster Buster position frequency matrix format from a file handle. Cluster Buster motif format: http://zlab.bu.edu/cluster-buster/help/cis-format.html r)ACGT>GATC)alphabetcountsN#cfg|]-\}}|t|.Sr)appendfloat)r nucleotidenucleotide_countnucleotide_countss r zread..4sJ8J(8**5<>"L&ARSSSE!+EJMM%(((!!""X^^-- *,2BR$H$H!Q ??3''!%~&&!++>D KrN)rBiorlistrr8r?rrr rBsr<;77777T777(((Vr