XfFPdZddlmZddlmZddlmZGddeZdZ dS) zParsing AlignACE output files.) Alignment)Motif)SeqceZdZdZdZdS)Recordz*AlignACE record (subclass of Python list).cd|_dS)zInitialize the class.N) parameters)selfs 3lib/python3.11/site-packages/Bio/motifs/alignace.py__init__zRecord.__init__s N)__name__ __module__ __qualname____doc__r r r rrs)44r rc4t}t|}||_t|}||_d}d}|D]1}|}|dkr|dddkri|_4|ddkr6|dd}|j|vd |vrK|d \}}|}|}||j|<|dd d krg|_|dd d kr;|}|dd ksJt|d}g} $|dd dkrrd} t| } t| | } t|d| _ || _|| _|| t!|ddkr?t#|dd} | |  d|vr|d}$t%||S)z3Parse an AlignACE format handle as a Record object.NParar# =InputrMAPACGT*z )rnextstripversioncommandr split sequencesappendintrrfloatscorenumbermasklenr ValueError)handlerecordliner-r,seq_namepar_name par_valuewords instancesalphabet alignmentmotifseqs r readr<sv XXF <rAs%$T-----r