XfdZddlZddlZdZGddeZGddeeZGdd eZ Gd d e Z Gd d e Z Gdde Z Gdde ZejejeZejejedrddlZdZejD]9ZejejedrdZn:esBejejejdrdZesejdeze dSdSdS)zCollection of modules for dealing with biological data in Python. The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. https://biopython.org Nz1.84ceZdZdZdS)MissingExternalDependencyErrorzMissing an external dependency. Used for things like missing command line tools. Important for our unit tests to allow skipping tests with missing external dependencies. N__name__ __module__ __qualname____doc__,lib/python3.11/site-packages/Bio/__init__.pyrrsr rceZdZdZdS)MissingPythonDependencyErroraBMissing an external python dependency (subclass of ImportError). Used for missing Python modules (rather than just a typical ImportError). Important for our unit tests to allow skipping tests with missing external python dependencies, while also allowing the exception to be caught as an ImportError. Nrr r r rrsr rceZdZdZdS)StreamModeErrorzIncorrect stream mode (text vs binary). This error should be raised when a stream (file or file-like object) argument is in text mode while the receiving function expects binary mode, or vice versa. Nrr r r rr'sr rceZdZdZdS)BiopythonWarninga]Biopython warning. Biopython should use this warning (or subclasses of it), making it easy to silence all our warning messages should you wish to: >>> import warnings >>> from Bio import BiopythonWarning >>> warnings.simplefilter('ignore', BiopythonWarning) Consult the warnings module documentation for more details. Nrr r r rr0s    r rceZdZdZdS)BiopythonParserWarningaBiopython parser warning. Some in-valid data files cannot be parsed and will trigger an exception. Where a reasonable interpretation is possible, Biopython will issue this warning to indicate a potential problem. To silence these warnings, use: >>> import warnings >>> from Bio import BiopythonParserWarning >>> warnings.simplefilter('ignore', BiopythonParserWarning) Consult the warnings module documentation for more details. Nrr r r rr>s    r rceZdZdZdS)BiopythonDeprecationWarninga=Biopython deprecation warning. Biopython uses this warning instead of the built in DeprecationWarning since those are ignored by default since Python 2.7. To silence all our deprecation warning messages, use: >>> import warnings >>> from Bio import BiopythonDeprecationWarning >>> warnings.simplefilter('ignore', BiopythonDeprecationWarning) Code marked as deprecated is likely to be removed in a future version of Biopython. To avoid removal of this code, please contact the Biopython developers via the mailing list or GitHub. Nrr r r rrMsr rceZdZdZdS)BiopythonExperimentalWarningaJBiopython experimental code warning. Biopython uses this warning for experimental code ('alpha' or 'beta' level code) which is released as part of the standard releases to mark sub-modules or functions for early adopters to test & give feedback. Code issuing this warning is likely to change (or even be removed) in a subsequent release of Biopython. Such code should NOT be used for production/stable code. It should only be used if: - You are running the latest release of Biopython, or ideally the latest code from our repository. - You are subscribed to the biopython-dev mailing list to provide feedback on this code, and to be alerted of changes to it. If all goes well, experimental code would be promoted to stable in a subsequent release, and this warning removed from it. Nrr r r rr_sr rzsetup.pyFzbiopython.egg-linkTasYou may be importing Biopython from inside the source tree. This is bad practice and might lead to downstream issues. In particular, you might encounter ImportErrors due to missing compiled C extensions. We recommend that you try running your code from outside the source tree. If you are outside the source tree then you have a setup.py file in an unexpected directory: )r oswarnings __version__ Exceptionr ImportErrorr ValueErrorrWarningrrrrpathdirname__file__ _parent_direxistsjoinsite _dev_modegetsitepackages_pisfilegetusersitepackageswarnr r r r-s  Y#A;j     w        -   "2$#3*goobgooh7788 7>>"',,{J7788 KKKI"d"$$ 7>>"',,r+?@@ A A I E    -T-//1EFF     : =H  H  +  (   r