XfP PdZddlZddlmZejde d d ZdS) zGeneric functions which are useful for working with HMMs. This just collects general functions which you might like to use in dealing with HMMs. N)BiopythonDeprecationWarningzThe 'Bio.HMM.Utilities' module is deprecated and will be removed in a future release of Biopython. Consider using the hmmlearn package instead. Emissions Real StatePredicted StateKcNtt|t|t|dz}||z }||}||}||}d} | |zt|kr|} nt|| z } t||| | |zt||| | |zt||| | |zdt|| |zkrdS| |z } )a=Print out a state sequence prediction in a nice manner. Arguments: - emissions -- The sequence of emissions of the sequence you are dealing with. - real_state -- The actual state path that generated the emissions. - predicted_state -- A state path predicted by some kind of HMM model. rT N)maxlenljustprint) emissions real_statepredicted_stateemission_title real_titlepredicted_title line_width title_length seq_length cur_position extensions 1lib/python3.11/site-packages/Bio/HMM/Utilities.pypretty_print_predictionrs_&s>**C OOS=Q=QRRUVVLl*J$)),77N!!,//J%++L99OL# : %Y 7 7"III5I T< z8Q+Q!RTTUUU SZ |j7P(PQSSTTT   |j/H HIII     y>>\J6 7 7 E " '#)rrrr)__doc__warningsBiorwarnrrrr"sx ++++++    %0#0#0#0#0#0#r