XfdZddlmZddlmZddlmZddlmZGdde Z dd Z d Z Gd deZ GddejZdS)z5Code for calling and parsing ScanProsite from ExPASy.) urlencode)urlopen)handler) ExpatParserceZdZdZdZdS)RecordzRepresents search results returned by ScanProsite. This record is a list containing the search results returned by ScanProsite. The record also contains the data members n_match, n_seq, capped, and warning. c>d|_d|_d|_d|_dSInitialize the class.N)n_matchn_seqcappedwarningselfs 6lib/python3.11/site-packages/Bio/ExPASy/ScanProsite.py__init__zRecord.__init__s"    N)__name__ __module__ __qualname____doc__rrrrrs-rrhttps://prosite.expasy.orgxmlc ||d}|D] \}}||||< t|}|d|}t|} | S)a Execute a ScanProsite search. Arguments: - mirror: The ScanProsite mirror to be used (default: https://prosite.expasy.org). - seq: The query sequence, or UniProtKB (Swiss-Prot, TrEMBL) accession - output: Format of the search results (default: xml) Further search parameters can be passed as keywords; see the documentation for programmatic access to ScanProsite at https://prosite.expasy.org/scanprosite/scanprosite_doc.html for a description of such parameters. This function returns a handle to the search results returned by ScanProsite. Search results in the XML format can be parsed into a Python object, by using the Bio.ExPASy.ScanProsite.read function. )seqoutputNz(/cgi-bin/prosite/scanprosite/PSScan.cgi?)itemsrr) rmirrorrkeywords parameterskeyvaluecommandurlhandles rscanr)"sn*//Jnn&&$$ U  #JsO ##G  F FW F FC S\\F Mrct}t}|||||j}|S)zBParse search results returned by ScanProsite into a Python object.)ContentHandlerParsersetContentHandlerparserecord)r(content_handler saxparserr/s rreadr2AsI$&&OI 000 OOF  #F Mrc eZdZdZdZddZdS)r,z7Process the result from a ScanProsite search (PRIVATE).c<tj|d|_dS)r TN)rr firsttimers rrzParser.__init__QsT"""rrc|jr0|ddddkrt|d|_tj|||S)zRaise an Error if plain text is received in the data. This is to show the Error messages returned by ScanProsite. Nzutf-8z 'BQBxw''722 &&&dG444rN)r)rrrrrr:rrrr,r,Ns=AA 555555rr,c2eZdZdZdZdZdZdZdZdZ dS) r+zAProcess and fill in the records, results of the search (PRIVATE).)startstop) sequence_ac sequence_id sequence_db signature_aclevel level_tagcg|_dSr )elementrs rrzContentHandler.__init__ts  rc\|j|d|_|jdgkrSt|_t |d|j_t |d|j_dS|jddgkri}|j|dSdS)z>Define the beginning of a record and stores the search record.rmatchsetr r matchN)rGappendcontentrr/intr r )rnameattrsrJs r startElementzContentHandler.startElementxs D!!! r^s <;""""""""""""++++++     T   (>55555[5552, , , , , W+, , , , , r