Ve~ddlmZmZmZmZmZddlmZddlm Z ddl m Z ddl m Z ddleeeeegZe de dZd Zy ) )CRITICALDEBUGERRORINFOWARN)SAMPLE_NAME_ATTR) __version__)VersionInHelpParser)*z (peppy )c ^d}d}tt||t}|jd}|j ddt t ttd |j d d d |j ddddi}tjD]\}}|j|||}|j ddttdtd|j ddttdtd|j ddtdd|tk7r|j dd d!d"n|j dd d#d!d$|||<|tj d%d&d'd(d)*|t j d+d,ddd-d./|t j d0d1dt d2d3|tj#}|j d+d,dd4d)*|j d5d6dddd78|tj d9d:dd;d<=|tj d+d,ddd->|tj d?d@ddAdddBC|tj d0dDddddEF|tj dGdHddddIF|tj dJdKddLM||fS)NNz%(prog)s - Interact with PEPsz http://eido.databio.org/)prog descriptionepilogversioncommand)destz --verbosity verbosityz0Choose level of verbosity (default: %(default)s))rtypechoiceshelpz--logging-level logging_levelz logging level)rrz--dbgdbg store_truez)Turn on debug mode (default: %(default)s))ractionr)rrz --st-indexFz6Sample table index to use, samples are identified by 'z ' by default.)requiredrdefaultrz --sst-indexz9Subsample table index to use, samples are identified by 'z --amendments+z$Names of the amendments to activate.)rrnargsrpepPEPz0Path to a PEP configuration file in yaml format.)metavarrr?)r#r rrz-sz--schemaTz)Path to a PEP schema file in yaml format.S)rrr#z-nz --sample-namezName of the samples to inspect.SN)rr rr#z-lz --attr-limit z'Number of sample attributes to display.zLName or index of the sample to validate. Only this sample will be validated.z-cz --just-configz7Whether samples should be excluded from the validation.)rrrrz-fz--formatyamlz8Output format (name of filter; use -l to see available).)rrr)rr rz-az--argsappendzDProvide arguments to the filter function (e.g. arg1=val1 arg2=val2).)r rrrrz--listzList available filters.)rrrrz-dz --describez$Show description for a given filter.z-pz--pathsz3Paths to dump conversion result as key=value pairs.)r r)r PKG_NAMEversion_combinedadd_subparsers add_argumentintrangelenLEVEL_BY_VERBOSITYSUBPARSER_MSGSitems add_parserstrr CONVERT_CMD VALIDATE_CMD INSPECT_CMDadd_mutually_exclusive_group) banneradditional_descriptionparser subparsersspscmddesc subparsergroups .lib/python3.12/site-packages/eido/argparser.pybuild_argparserrDs ,F9 % F&&I&6J   c,-. ?  )oV   8  C#))+' T))#4d)K  $IJZI[[hi    $LM]L^^kl    7   +   " "G #   " "G # CO'R ""  8 # !!  . " !!   6 "   : : rNsD66(.(XtT59!](=/;drE