LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
qiime2/__init__.py
qiime2/_version.py
qiime2/citations.bib
qiime2/plugins.py
qiime2/util.py
qiime2.egg-info/PKG-INFO
qiime2.egg-info/SOURCES.txt
qiime2.egg-info/dependency_links.txt
qiime2.egg-info/entry_points.txt
qiime2.egg-info/not-zip-safe
qiime2.egg-info/top_level.txt
qiime2/core/__init__.py
qiime2/core/cache.py
qiime2/core/cite.py
qiime2/core/enan.py
qiime2/core/exceptions.py
qiime2/core/format.py
qiime2/core/missing.py
qiime2/core/path.py
qiime2/core/transform.py
qiime2/core/util.py
qiime2/core/validate.py
qiime2/core/archive/__init__.py
qiime2/core/archive/archiver.py
qiime2/core/archive/provenance.py
qiime2/core/archive/format/__init__.py
qiime2/core/archive/format/util.py
qiime2/core/archive/format/v0.py
qiime2/core/archive/format/v1.py
qiime2/core/archive/format/v2.py
qiime2/core/archive/format/v3.py
qiime2/core/archive/format/v4.py
qiime2/core/archive/format/v5.py
qiime2/core/archive/format/v6.py
qiime2/core/archive/format/tests/__init__.py
qiime2/core/archive/format/tests/test_util.py
qiime2/core/archive/format/tests/test_v0.py
qiime2/core/archive/tests/__init__.py
qiime2/core/archive/tests/test_archiver.py
qiime2/core/archive/tests/test_citations.py
qiime2/core/archive/tests/test_provenance.py
qiime2/core/testing/__init__.py
qiime2/core/testing/citations.bib
qiime2/core/testing/examples.py
qiime2/core/testing/format.py
qiime2/core/testing/mapped.py
qiime2/core/testing/method.py
qiime2/core/testing/pipeline.py
qiime2/core/testing/plugin.py
qiime2/core/testing/transformer.py
qiime2/core/testing/type.py
qiime2/core/testing/util.py
qiime2/core/testing/validator.py
qiime2/core/testing/visualizer.py
qiime2/core/testing/tests/__init__.py
qiime2/core/testing/tests/test_mapped_actions.py
qiime2/core/tests/__init__.py
qiime2/core/tests/test_cache.py
qiime2/core/tests/test_enan.py
qiime2/core/tests/test_missing.py
qiime2/core/tests/test_path.py
qiime2/core/tests/test_pipeline_resumption.py
qiime2/core/tests/test_util.py
qiime2/core/tests/test_validate.py
qiime2/core/type/__init__.py
qiime2/core/type/collection.py
qiime2/core/type/grammar.py
qiime2/core/type/meta.py
qiime2/core/type/parse.py
qiime2/core/type/primitive.py
qiime2/core/type/semantic.py
qiime2/core/type/signature.py
qiime2/core/type/template.py
qiime2/core/type/util.py
qiime2/core/type/visualization.py
qiime2/core/type/tests/__init__.py
qiime2/core/type/tests/test_collection.py
qiime2/core/type/tests/test_grammar.py
qiime2/core/type/tests/test_meta.py
qiime2/core/type/tests/test_parse.py
qiime2/core/type/tests/test_primitive.py
qiime2/core/type/tests/test_semantic.py
qiime2/core/type/tests/test_util.py
qiime2/jupyter/__init__.py
qiime2/jupyter/handlers.py
qiime2/jupyter/hooks.py
qiime2/jupyter/template.py
qiime2/metadata/__init__.py
qiime2/metadata/base.py
qiime2/metadata/io.py
qiime2/metadata/metadata.py
qiime2/metadata/tests/__init__.py
qiime2/metadata/tests/test_io.py
qiime2/metadata/tests/test_metadata.py
qiime2/metadata/tests/test_metadata_column.py
qiime2/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv
qiime2/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv
qiime2/metadata/tests/data/invalid/data-longer-than-header.tsv
qiime2/metadata/tests/data/invalid/directive-after-directives-section.tsv
qiime2/metadata/tests/data/invalid/directive-before-header.tsv
qiime2/metadata/tests/data/invalid/directive-longer-than-header.tsv
qiime2/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv
qiime2/metadata/tests/data/invalid/duplicate-column-names.tsv
qiime2/metadata/tests/data/invalid/duplicate-directives.tsv
qiime2/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv
qiime2/metadata/tests/data/invalid/duplicate-ids.tsv
qiime2/metadata/tests/data/invalid/empty-column-name.tsv
qiime2/metadata/tests/data/invalid/empty-file
qiime2/metadata/tests/data/invalid/empty-id.tsv
qiime2/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv
qiime2/metadata/tests/data/invalid/header-only.tsv
qiime2/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv
qiime2/metadata/tests/data/invalid/invalid-header.tsv
qiime2/metadata/tests/data/invalid/missing-unknown-scheme.tsv
qiime2/metadata/tests/data/invalid/non-utf-8.tsv
qiime2/metadata/tests/data/invalid/qiime1-empty.tsv
qiime2/metadata/tests/data/invalid/simple-utf-16be.txt
qiime2/metadata/tests/data/invalid/simple-utf-16le.txt
qiime2/metadata/tests/data/invalid/types-directive-non-numeric.tsv
qiime2/metadata/tests/data/invalid/unrecognized-column-type.tsv
qiime2/metadata/tests/data/invalid/unrecognized-directive.tsv
qiime2/metadata/tests/data/invalid/whitespace-only-column-name.tsv
qiime2/metadata/tests/data/invalid/whitespace-only-id.tsv
qiime2/metadata/tests/data/valid/BOM-simple.txt
qiime2/metadata/tests/data/valid/all-cells-padded.tsv
qiime2/metadata/tests/data/valid/biom-observation-metadata.tsv
qiime2/metadata/tests/data/valid/case-insensitive-types-directive.tsv
qiime2/metadata/tests/data/valid/column-order.tsv
qiime2/metadata/tests/data/valid/comments.tsv
qiime2/metadata/tests/data/valid/complete-types-directive.tsv
qiime2/metadata/tests/data/valid/empty-rows.tsv
qiime2/metadata/tests/data/valid/empty-types-directive.tsv
qiime2/metadata/tests/data/valid/jagged-trailing-columns.tsv
qiime2/metadata/tests/data/valid/jagged.tsv
qiime2/metadata/tests/data/valid/leading-trailing-whitespace.tsv
qiime2/metadata/tests/data/valid/mac-line-endings.tsv
qiime2/metadata/tests/data/valid/minimal.tsv
qiime2/metadata/tests/data/valid/missing-data.tsv
qiime2/metadata/tests/data/valid/missing-insdc-no-directive.tsv
qiime2/metadata/tests/data/valid/missing-insdc.tsv
qiime2/metadata/tests/data/valid/no-columns.tsv
qiime2/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv
qiime2/metadata/tests/data/valid/no-newline-at-eof.tsv
qiime2/metadata/tests/data/valid/non-standard-characters.tsv
qiime2/metadata/tests/data/valid/numeric-column.tsv
qiime2/metadata/tests/data/valid/override-insdc.tsv
qiime2/metadata/tests/data/valid/partial-types-directive.tsv
qiime2/metadata/tests/data/valid/qiime1.tsv
qiime2/metadata/tests/data/valid/qiita-preparation-information.tsv
qiime2/metadata/tests/data/valid/qiita-sample-information.tsv
qiime2/metadata/tests/data/valid/recommended-ids.tsv
qiime2/metadata/tests/data/valid/rows-shorter-than-header.tsv
qiime2/metadata/tests/data/valid/simple-with-directive.tsv
qiime2/metadata/tests/data/valid/simple.tsv
qiime2/metadata/tests/data/valid/simple.txt
qiime2/metadata/tests/data/valid/single-column.tsv
qiime2/metadata/tests/data/valid/single-id.tsv
qiime2/metadata/tests/data/valid/trailing-columns.tsv
qiime2/metadata/tests/data/valid/unix-line-endings.tsv
qiime2/metadata/tests/data/valid/windows-line-endings.tsv
qiime2/plugin/__init__.py
qiime2/plugin/plugin.py
qiime2/plugin/testing.py
qiime2/plugin/util.py
qiime2/plugin/model/__init__.py
qiime2/plugin/model/base.py
qiime2/plugin/model/directory_format.py
qiime2/plugin/model/file_format.py
qiime2/plugin/model/tests/__init__.py
qiime2/plugin/model/tests/test_directory_format.py
qiime2/plugin/model/tests/test_file_format.py
qiime2/plugin/model/tests/data/test_text_files/test_text1.txt
qiime2/plugin/model/tests/data/test_text_files/test_text2.txt
qiime2/plugin/model/tests/data/test_text_files_extra/bad_4th.txt
qiime2/plugin/model/tests/data/test_text_files_extra/test_text1.txt
qiime2/plugin/model/tests/data/test_text_files_extra/test_text2.txt
qiime2/plugin/model/tests/data/test_text_files_extra/test_text3.txt
qiime2/plugin/tests/__init__.py
qiime2/plugin/tests/test_plugin.py
qiime2/plugin/tests/test_tests.py
qiime2/sdk/__init__.py
qiime2/sdk/action.py
qiime2/sdk/actiongraph.py
qiime2/sdk/context.py
qiime2/sdk/parallel_config.py
qiime2/sdk/plugin_manager.py
qiime2/sdk/proxy.py
qiime2/sdk/result.py
qiime2/sdk/results.py
qiime2/sdk/usage.py
qiime2/sdk/util.py
qiime2/sdk/tests/__init__.py
qiime2/sdk/tests/test_action.py
qiime2/sdk/tests/test_actiongraph.py
qiime2/sdk/tests/test_artifact.py
qiime2/sdk/tests/test_config.py
qiime2/sdk/tests/test_method.py
qiime2/sdk/tests/test_pipeline.py
qiime2/sdk/tests/test_plugin_manager.py
qiime2/sdk/tests/test_result.py
qiime2/sdk/tests/test_results.py
qiime2/sdk/tests/test_usage.py
qiime2/sdk/tests/test_util.py
qiime2/sdk/tests/test_visualization.py
qiime2/sdk/tests/test_visualizer.py
qiime2/sdk/tests/data/intsequence-fail-max-validation.txt
qiime2/sdk/tests/data/mapping_config.toml
qiime2/sdk/tests/data/mapping_only_config.toml
qiime2/sdk/tests/data/test_config.toml
qiime2/tests/__init__.py
qiime2/tests/mystery_stew.py
qiime2/tests/test_artifact_api.py
qiime2/tests/test_util.py