The "Single Cell Expression Set" (SCESet) class
Additional accessors for the typical elements of a SingleCellExperiment object.
Get feature annotation information from Biomart
Accessor and replacement for bootstrap results in a 'SingleCellExperiment' object
Per-gene variance explained by a variable
Create a ggplot from a SingleCellExperiment
Multiple plot function for ggplot2 plots
Count the number of non-zero counts per cell or feature
Plot the explanatory PCs for each variable
Plot explanatory variables ordered by percentage of variance explained
Plot heatmap of group-level expression averages
Plot an overview of expression for each cell
Project cells into an arbitrary dimensionality reduction space.
Convert an SCESet object to a SingleCellExperiment object