Software for the integration of multi-omics experiments in
Bioconductor
c(person("Marcel", "Ramos", email = "marcel.ramos@roswellpark.org",
    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3242-0582")),
    person("Levi", "Waldron", email = "lwaldron.research@gmail.com",
    role = "aut"),
    person("MultiAssay", "SIG", email = "biocmultiassay@googlegroups.com",
    role = "ctb"))
MultiAssayExperiment harmonizes data management of
    multiple experimental assays performed on an overlapping set of specimens.
    It provides a familiar Bioconductor user experience by extending concepts
    from SummarizedExperiment, supporting an open-ended mix of standard data
    classes for individual assays, and allowing subsetting by genomic ranges
    or rownames. Facilities are provided for reshaping data into wide and
    long formats for adaptability to graphing and downstream analysis.
R (>= 4.2.0), SummarizedExperiment (>= 1.3.81)
methods, GenomicRanges (>= 1.25.93), BiocBaseUtils,
BiocGenerics, DelayedArray, S4Vectors (>= 0.23.19), IRanges,
Biobase, stats, tidyr, utils
BiocStyle, HDF5Array (>= 1.19.17), knitr, maftools (>=
2.7.10), rmarkdown, R.rsp, RaggedExperiment, UpSetR, survival,
survminer, testthat
'ExperimentList-class.R' 'MultiAssayExperiment-class.R'
'MatchedAssayExperiment-class.R' 'subsetBy-methods.R'
'MultiAssayExperiment-subset.R'
'MultiAssayExperiment-methods.R'
'MultiAssayExperiment-helpers.R' 'MultiAssayExperiment-pkg.R'
'MultiAssayExperimentToMAF.R' 'assay-methods.R' 'data.R'
'hasAssay.R' 'listToMap.R' 'mapToList.R' 'prepMultiAssay.R'
'reexports.R' 'saveHDF5MultiAssayExperiment.R' 'upsetSamples.R'
'utilities.R'
Marcel Ramos [aut, cre] (<https://orcid.org/0000-0002-3242-0582>),
  Levi Waldron [aut],
  MultiAssay SIG [ctb]