LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
q2_demux/__init__.py
q2_demux/_demux.py
q2_demux/_ecc.py
q2_demux/_examples.py
q2_demux/_filter.py
q2_demux/_format.py
q2_demux/_subsample.py
q2_demux/_tabulate.py
q2_demux/_transformer.py
q2_demux/_type.py
q2_demux/_version.py
q2_demux/citations.bib
q2_demux/plugin_setup.py
q2_demux.egg-info/PKG-INFO
q2_demux.egg-info/SOURCES.txt
q2_demux.egg-info/dependency_links.txt
q2_demux.egg-info/entry_points.txt
q2_demux.egg-info/not-zip-safe
q2_demux.egg-info/top_level.txt
q2_demux/_summarize/__init__.py
q2_demux/_summarize/_visualizer.py
q2_demux/_summarize/assets/index.html
q2_demux/_summarize/assets/overview.html
q2_demux/_summarize/assets/quality-plot.html
q2_demux/_summarize/assets/dist/bundle.js
q2_demux/_summarize/assets/dist/d3-license.txt
q2_demux/_summarize/assets/dist/vendor.bundle.js
q2_demux/tests/__init__.py
q2_demux/tests/test_demux.py
q2_demux/tests/test_ecc.py
q2_demux/tests/test_filter.py
q2_demux/tests/test_format.py
q2_demux/tests/test_subsample.py
q2_demux/tests/test_tabulate.py
q2_demux/tests/test_transformer.py
q2_demux/tests/data/bad/not_real_data.fastq.gz
q2_demux/tests/data/emp_multiplexed/barcodes.fastq.gz
q2_demux/tests/data/emp_multiplexed/sequences.fastq.gz
q2_demux/tests/data/emp_multiplexed_single_end/Undetermined_S0_L001_I1_001.fastq.gz
q2_demux/tests/data/emp_multiplexed_single_end/Undetermined_S0_L001_R1_001.fastq.gz
q2_demux/tests/data/error_correction_details/invalid.tsv
q2_demux/tests/data/error_correction_details/missing_columns.tsv
q2_demux/tests/data/error_correction_details/positive.tsv
q2_demux/tests/data/filter_samples_paired_end/filter_all.tsv
q2_demux/tests/data/filter_samples_paired_end/filter_none.tsv
q2_demux/tests/data/filter_samples_paired_end/filter_subset.tsv
q2_demux/tests/data/filter_samples_paired_end/dir_fmt/MANIFEST
q2_demux/tests/data/filter_samples_paired_end/dir_fmt/metadata.yml
q2_demux/tests/data/filter_samples_paired_end/dir_fmt/sample1_1_L001_R1_001.fastq.gz
q2_demux/tests/data/filter_samples_paired_end/dir_fmt/sample1_1_L001_R2_001.fastq.gz
q2_demux/tests/data/filter_samples_paired_end/dir_fmt/sample2_2_L001_R1_001.fastq.gz
q2_demux/tests/data/filter_samples_paired_end/dir_fmt/sample2_2_L001_R2_001.fastq.gz
q2_demux/tests/data/filter_samples_single_end/filter_all.tsv
q2_demux/tests/data/filter_samples_single_end/filter_none.tsv
q2_demux/tests/data/filter_samples_single_end/filter_subset.tsv
q2_demux/tests/data/filter_samples_single_end/dir_fmt/MANIFEST
q2_demux/tests/data/filter_samples_single_end/dir_fmt/metadata.yml
q2_demux/tests/data/filter_samples_single_end/dir_fmt/sample1_1_L001_R1_001.fastq.gz
q2_demux/tests/data/filter_samples_single_end/dir_fmt/sample2_2_L001_R1_001.fastq.gz
q2_demux/tests/data/reverse_only/MANIFEST
q2_demux/tests/data/reverse_only/metadata.yml
q2_demux/tests/data/reverse_only/sample2_2_L001_R2_001.fastq.gz
q2_demux/tests/data/subsample_paired_end/sample1_1_L001_R1_001.fastq.gz
q2_demux/tests/data/subsample_paired_end/sample1_1_L001_R2_001.fastq.gz
q2_demux/tests/data/subsample_paired_end/sample2_2_L001_R1_001.fastq.gz
q2_demux/tests/data/subsample_paired_end/sample2_2_L001_R2_001.fastq.gz
q2_demux/tests/data/subsample_paired_end/sample3_3_L001_R1_001.fastq.gz
q2_demux/tests/data/subsample_paired_end/sample3_3_L001_R2_001.fastq.gz
q2_demux/tests/data/subsample_paired_end/sample4_4_L001_R1_001.fastq.gz
q2_demux/tests/data/subsample_paired_end/sample4_4_L001_R2_001.fastq.gz
q2_demux/tests/data/subsample_paired_end/sample5_5_L001_R1_001.fastq.gz
q2_demux/tests/data/subsample_paired_end/sample5_5_L001_R2_001.fastq.gz
q2_demux/tests/data/subsample_single_end/sample1_1_L001_R1_001.fastq.gz
q2_demux/tests/data/subsample_single_end/sample2_2_L001_R1_001.fastq.gz
q2_demux/tests/data/subsample_single_end/sample3_3_L001_R1_001.fastq.gz
q2_demux/tests/data/subsample_single_end/sample4_4_L001_R1_001.fastq.gz
q2_demux/tests/data/subsample_single_end/sample5_5_L001_R1_001.fastq.gz
q2_demux/tests/data/summarize_empty/empty_forward_in_paired/EMPTY_FORWARD_L001_R1_001.fastq.gz
q2_demux/tests/data/summarize_empty/empty_forward_in_paired/EMPTY_FORWARD_L001_R2_001.fastq.gz
q2_demux/tests/data/summarize_empty/empty_forward_in_paired/MANIFEST
q2_demux/tests/data/summarize_empty/empty_forward_in_paired/metadata.yml
q2_demux/tests/data/summarize_empty/empty_paired_end/EMPTY_FILE_L001_R1_001.fastq.gz
q2_demux/tests/data/summarize_empty/empty_paired_end/EMPTY_FILE_L001_R2_001.fastq.gz
q2_demux/tests/data/summarize_empty/empty_paired_end/MANIFEST
q2_demux/tests/data/summarize_empty/empty_paired_end/metadata.yml
q2_demux/tests/data/summarize_empty/empty_reverse_in_paired/EMPTY_REVERSE_L001_R1_001.fastq.gz
q2_demux/tests/data/summarize_empty/empty_reverse_in_paired/EMPTY_REVERSE_L001_R2_001.fastq.gz
q2_demux/tests/data/summarize_empty/empty_reverse_in_paired/MANIFEST
q2_demux/tests/data/summarize_empty/empty_reverse_in_paired/metadata.yml
q2_demux/tests/data/summarize_empty/empty_single_end/EMPTY_SINGLE_L001_R1_001.fastq.gz
q2_demux/tests/data/summarize_empty/empty_single_end/MANIFEST
q2_demux/tests/data/summarize_empty/empty_single_end/metadata.yml
q2_demux/tests/data/tabulate_read_counts_paired_end_1/sample1_1_L001_R1_001.fastq.gz
q2_demux/tests/data/tabulate_read_counts_paired_end_1/sample1_1_L001_R2_001.fastq.gz
q2_demux/tests/data/tabulate_read_counts_single_end_1/sample1_1_L001_R1_001.fastq.gz
q2_demux/tests/data/tabulate_read_counts_single_end_1/sample2_2_L001_R1_001.fastq.gz
q2_demux/tests/data/tabulate_read_counts_single_end_1/sample3_3_L001_R1_001.fastq.gz
q2_demux/tests/data/tabulate_read_counts_single_end_1/sample4_4_L001_R1_001.fastq.gz
q2_demux/tests/data/tabulate_read_counts_single_end_1/sample5_5_L001_R1_001.fastq.gz
q2_demux/tests/data/tabulate_read_counts_single_end_2/sample6_1_L001_R1_001.fastq.gz
q2_demux/tests/data/tabulate_read_counts_single_end_2/sample7_2_L001_R1_001.fastq.gz