Handling and analysis of high-throughput microbiome census data
phyloseq provides a set of classes and tools
    to facilitate the import, storage, analysis, and
    graphical display of microbiome census data.
Paul J. McMurdie <joey711@gmail.com>,
    Susan Holmes <susan@stat.stanford.edu>, with
    contributions from Gregory Jordan and Scott Chamberlain
ImmunoOncology, Sequencing, Microbiome, Metagenomics,
Clustering, Classification, MultipleComparison,
GeneticVariability
'allClasses.R' 'allPackage.R' 'allData.R' 'as-methods.R'
'show-methods.R' 'plot-methods.R' 'extract-methods.R'
'almostAllAccessors.R' 'otuTable-class.R' 'phyloseq-class.R'
'taxonomyTable-class.R' 'IO-methods.R' 'merge-methods.R'
'multtest-wrapper.R' 'ordination-methods.R'
'transform_filter-methods.R' 'validity-methods.R'
'assignment-methods.R' 'sampleData-class.R' 'extend_vegan.R'
'network-methods.R' 'distance-methods.R'
'deprecated_functions.R' 'extend_DESeq2.R' 'phylo-class.R'
'extend_metagenomeSeq.R'