Identify Contaminants in Marker-gene and Metagenomics Sequencing Data


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Documentation for package ‘decontam’ version 1.18.0

Help Pages

isContaminant Identify contaminant sequences.
isContaminant-method Identify contaminant sequences.
isNotContaminant Identify non-contaminant sequences.
isNotContaminant-method Identify non-contaminant sequences.
plot_condition Plot DNA concentrations as a function of experimental conditions.
plot_frequency Plot frequencies as a function of input DNA concentration