U ¦ºeØ ã@sddd„Zdd„Zdd„ZdS) Tc Cs¶ddl}ddl}ddl}|j | ¡¡}|sH|dddƒ}|j|dgdS|dddƒ}g}| ¡D]:\}}||d d ƒ}||d d ƒ} | |t |ƒt | ƒ|f¡q`|j|dd d dgdSdS)a”Obtain the name and description of known contexts Parameters ---------- detail : bool, optional If True, obtain additional context detail. Returns ------- DataFrame Containing context information. Redis command summary --------------------- HGETALL state:contexts SCARD :samples-represented SCARD :features-represented éNÚstateZHKEYSÚcontextsZ ContextName)ÚcolumnsZHGETALLZSCARDzsamples-representedzfeatures-representedZSamplesWithDataZFeaturesWithDataÚ Description) ZpandasÚredbiomÚredbiom._requestsÚ _requestsZmake_getZ get_configZ DataFrameÚitemsÚappendÚint) ÚdetailÚpdrÚgetrÚresultÚnameÚdescZ ctx_n_sampZ ctx_n_feat©rúp/mounts/lovelace/software/anaconda3/envs/qiime2-amplicon-2023.9/lib/python3.8/site-packages/redbiom/summarize.pyrs"     þrcCsFddl}|j |¡ddl}|j ||d|g¡}ddl}|j ||¡S)avSummarize a metadata category from samples from a set of features Parameters ---------- context : str A context to search in. category : str The category to summarize. features : Iterable of str The features to search for samples with. exact : bool If true, all samples must contain all specified features. If false, all samples contain at least one of the features. Returns ------- pandas.Series A series indexed by the sample ID and valued by its category value. A None is used if the sample does not have that piece of metadata. rNÚfeature) rrÚvalidZ redbiom.utilÚutilZids_fromÚ redbiom.fetchÚfetchÚcategory_sample_values)ÚcontextÚcategoryÚfeaturesÚexactrÚsamplesrrrÚcategory_from_features+s  rcCsddl}|j ||¡S)a”Summarize a metadata category from samples Parameters ---------- category : str The category to summarize. samples : Iterable of str The samples to search for samples with. Returns ------- pandas.Series A series indexed by the sample ID and valued by its category value. A None is used if the sample does not have that piece of metadata. rN)rrr)rrrrrrÚcategory_from_samplesJsr N)T)rrr rrrrÚs *