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  ã                   @   s   ddd„Z dd„ ZdS )FNc              	   C   sX  ddl m}m} ddl}ddl}ddl}ddl}ddl}ddl}ddl	}|dkrd| 
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||tƒddƒ}|jjd |kr²|g|jj |j_t|jj d¡ƒ}| |jj||
¡}tƒ }t| ƒD ]n\}}|d	kr| |jj|||	|d
¡ qä|dkrä|r(tdƒ‚t|jj ||dj!ƒ}|rN||M }qä|}qä|S )aÛ  Find samples or categories

    Parameters
    ----------
    query : str
        The query to execute
    categories : boolean, optional
        Whether to search for categories (True) or samples (False, default).
    get : function
        A getter

    Raises
    ------
    TypeError
        When unexpected operators are used
    ValueError
        When a where query is used with a categories search

    Returns
    -------
    set
        The observed sample IDs
    é    )ÚjoinÚdirnameNzcategory-searchztext-searchZassetsZ	nltk_dataÚenglishÚset)ÚgetÚtargetÚstemmerÚwherez0where clauses not allowed with a category search)r   )"Úos.pathr   r   ÚredbiomZredbiom.set_exprZredbiom.where_exprZredbiom._requestsZredbiom.utilÚ	functoolsÚnltkZ
get_configZ	_requestsZmake_getZPorterStemmerZMARTIN_EXTENSIONSÚ__file__ÚdataÚpathÚ	frozensetZcorpusZ	stopwordsÚwordsÚpartialÚutilZstemsr   Ú
query_planÚupdateZset_exprZsetevalÚ
ValueErrorZ
where_exprZ	whereevalÚindex)ÚqueryÚ
categoriesr   r   r   r   r   r   Úconfigr   r   Znltk_data_pathÚstopsZstem_fZsamplesZ	plan_typeÚqZobs© r   úm/mounts/lovelace/software/anaconda3/envs/qiime2-amplicon-2023.9/lib/python3.8/site-packages/redbiom/search.pyÚmetadata_full   sF    
þ

r    c                 C   s°   |   d¡r4|  dd¡d  ¡ }|s*tdƒ‚d|fgS |  dd¡}t|ƒD ]$\}}|s\tdƒ‚||  ¡ ||< qHt|ƒdkrŒd|d  ¡ fgS d|d  ¡ fd|d  ¡ fgS dS )a  Light sanity checking and query partitioning

    Parameters
    ----------
    query : str
        The query to operate on

    Returns
    -------
    list of tuple
        The (query type, query).

    Raises
    ------
    ValueError
       When there are no queries
    r	   é   zNo queryr   r   N)Ú
startswithÚsplitÚstripr   Ú	enumerateÚlen)r   ÚpartÚpartsÚir   r   r   r   E   s    

r   )FN)r    r   r   r   r   r   Ú<module>   s   
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