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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| LICENSE | 2024-10-03 15:51 | 1.7K | |
| README | 2024-10-03 15:51 | 5.9K | |
| amplicon_stats.c | 2024-10-03 15:51 | 63K | |
| amplicon_stats.c.pysam.c | 2024-10-03 15:51 | 63K | |
| bam.c | 2024-10-03 15:51 | 8.8K | |
| bam.c.pysam.c | 2024-10-03 15:51 | 8.8K | |
| bam.h | 2024-10-03 15:51 | 1.5K | |
| bam2depth.c | 2024-10-03 15:51 | 33K | |
| bam2depth.c.pysam.c | 2024-10-03 15:51 | 33K | |
| bam_addrprg.c | 2024-10-03 15:51 | 16K | |
| bam_addrprg.c.pysam.c | 2024-10-03 15:51 | 16K | |
| bam_ampliconclip.c | 2024-10-03 15:51 | 35K | |
| bam_ampliconclip.c.pysam.c | 2024-10-03 15:51 | 36K | |
| bam_ampliconclip.h | 2024-10-03 15:51 | 1.8K | |
| bam_aux.c | 2024-10-03 15:51 | 2.1K | |
| bam_aux.c.pysam.c | 2024-10-03 15:51 | 2.1K | |
| bam_cat.c | 2024-10-03 15:51 | 19K | |
| bam_cat.c.pysam.c | 2024-10-03 15:51 | 20K | |
| bam_color.c | 2024-10-03 15:51 | 4.9K | |
| bam_color.c.pysam.c | 2024-10-03 15:51 | 4.9K | |
| bam_consensus.c | 2024-10-03 15:51 | 97K | |
| bam_consensus.c.pysam.c | 2024-10-03 15:51 | 98K | |
| bam_fastq.c | 2024-10-03 15:51 | 33K | |
| bam_fastq.c.pysam.c | 2024-10-03 15:51 | 33K | |
| bam_flags.c | 2024-10-03 15:51 | 3.2K | |
| bam_flags.c.pysam.c | 2024-10-03 15:51 | 3.2K | |
| bam_import.c | 2024-10-03 15:51 | 16K | |
| bam_import.c.pysam.c | 2024-10-03 15:51 | 16K | |
| bam_index.c | 2024-10-03 15:51 | 9.2K | |
| bam_index.c.pysam.c | 2024-10-03 15:51 | 9.3K | |
| bam_lpileup.c | 2024-10-03 15:51 | 6.8K | |
| bam_lpileup.c.pysam.c | 2024-10-03 15:51 | 6.9K | |
| bam_lpileup.h | 2024-10-03 15:51 | 2.0K | |
| bam_markdup.c | 2024-10-03 15:51 | 82K | |
| bam_markdup.c.pysam.c | 2024-10-03 15:51 | 82K | |
| bam_mate.c | 2024-10-03 15:51 | 25K | |
| bam_mate.c.pysam.c | 2024-10-03 15:51 | 25K | |
| bam_md.c | 2024-10-03 15:51 | 18K | |
| bam_md.c.pysam.c | 2024-10-03 15:51 | 18K | |
| bam_plbuf.c | 2024-10-03 15:51 | 2.1K | |
| bam_plbuf.c.pysam.c | 2024-10-03 15:51 | 2.1K | |
| bam_plbuf.h | 2024-10-03 15:51 | 2.1K | |
| bam_plcmd.c | 2024-10-03 15:51 | 45K | |
| bam_plcmd.c.pysam.c | 2024-10-03 15:51 | 45K | |
| bam_quickcheck.c | 2024-10-03 15:51 | 6.6K | |
| bam_quickcheck.c.pysam.c | 2024-10-03 15:51 | 6.7K | |
| bam_reheader.c | 2024-10-03 15:51 | 20K | |
| bam_reheader.c.pysam.c | 2024-10-03 15:51 | 20K | |
| bam_rmdup.c | 2024-10-03 15:51 | 10K | |
| bam_rmdup.c.pysam.c | 2024-10-03 15:51 | 11K | |
| bam_rmdupse.c | 2024-10-03 15:51 | 7.3K | |
| bam_rmdupse.c.pysam.c | 2024-10-03 15:51 | 7.4K | |
| bam_samples.c | 2024-10-03 15:51 | 14K | |
| bam_samples.c.pysam.c | 2024-10-03 15:51 | 14K | |
| bam_sort.c | 2024-10-03 15:51 | 130K | |
| bam_sort.c.pysam.c | 2024-10-03 15:51 | 131K | |
| bam_split.c | 2024-10-03 15:51 | 21K | |
| bam_split.c.pysam.c | 2024-10-03 15:51 | 21K | |
| bam_stat.c | 2024-10-03 15:51 | 13K | |
| bam_stat.c.pysam.c | 2024-10-03 15:51 | 14K | |
| bamshuf.c | 2024-10-03 15:51 | 20K | |
| bamshuf.c.pysam.c | 2024-10-03 15:51 | 20K | |
| bamtk.c | 2024-10-03 15:51 | 13K | |
| bamtk.c.pysam.c | 2024-10-03 15:51 | 13K | |
| bedcov.c | 2024-10-03 15:51 | 10K | |
| bedcov.c.pysam.c | 2024-10-03 15:51 | 11K | |
| bedidx.c | 2024-10-03 15:51 | 19K | |
| bedidx.c.pysam.c | 2024-10-03 15:51 | 19K | |
| bedidx.h | 2024-10-03 15:51 | 1.7K | |
| config.h | 2024-10-03 15:51 | 77 | |
| consensus_pileup.c | 2024-10-03 15:51 | 18K | |
| consensus_pileup.c.pysam.c | 2024-10-03 15:51 | 19K | |
| consensus_pileup.h | 2024-10-03 15:51 | 4.5K | |
| coverage.c | 2024-10-03 15:51 | 27K | |
| coverage.c.pysam.c | 2024-10-03 15:51 | 27K | |
| cram_size.c | 2024-10-03 15:51 | 20K | |
| cram_size.c.pysam.c | 2024-10-03 15:51 | 20K | |
| cut_target.c | 2024-10-03 15:51 | 8.7K | |
| cut_target.c.pysam.c | 2024-10-03 15:51 | 8.9K | |
| dict.c | 2024-10-03 15:51 | 7.3K | |
| dict.c.pysam.c | 2024-10-03 15:51 | 7.5K | |
| faidx.c | 2024-10-03 15:51 | 15K | |
| faidx.c.pysam.c | 2024-10-03 15:51 | 15K | |
| lz4/ | 2024-10-03 15:51 | - | |
| padding.c | 2024-10-03 15:51 | 25K | |
| padding.c.pysam.c | 2024-10-03 15:51 | 25K | |
| phase.c | 2024-10-03 15:51 | 29K | |
| phase.c.pysam.c | 2024-10-03 15:51 | 29K | |
| reference.c | 2024-10-03 15:51 | 18K | |
| reference.c.pysam.c | 2024-10-03 15:51 | 18K | |
| reset.c | 2024-10-03 15:51 | 20K | |
| reset.c.pysam.c | 2024-10-03 15:51 | 21K | |
| sam_opts.c | 2024-10-03 15:51 | 6.8K | |
| sam_opts.c.pysam.c | 2024-10-03 15:51 | 6.9K | |
| sam_opts.h | 2024-10-03 15:51 | 4.0K | |
| sam_utils.c | 2024-10-03 15:51 | 5.7K | |
| sam_utils.c.pysam.c | 2024-10-03 15:51 | 5.8K | |
| sam_utils.h | 2024-10-03 15:51 | 3.3K | |
| sam_view.c | 2024-10-03 15:51 | 59K | |
| sam_view.c.pysam.c | 2024-10-03 15:51 | 59K | |
| sample.c | 2024-10-03 15:51 | 4.4K | |
| sample.c.pysam.c | 2024-10-03 15:51 | 4.5K | |
| sample.h | 2024-10-03 15:51 | 1.5K | |
| samtools.h | 2024-10-03 15:51 | 1.9K | |
| samtools.pysam.c | 2024-10-03 15:51 | 1.6K | |
| samtools.pysam.h | 2024-10-03 15:51 | 1.8K | |
| samtools_config_vars.h | 2024-10-03 15:51 | 681 | |
| splaysort.h | 2024-10-03 15:51 | 14K | |
| stats.c | 2024-10-03 15:51 | 106K | |
| stats.c.pysam.c | 2024-10-03 15:51 | 107K | |
| stats_isize.c | 2024-10-03 15:51 | 7.9K | |
| stats_isize.c.pysam.c | 2024-10-03 15:51 | 7.9K | |
| stats_isize.h | 2024-10-03 15:51 | 2.4K | |
| tmp_file.c | 2024-10-03 15:51 | 13K | |
| tmp_file.c.pysam.c | 2024-10-03 15:51 | 13K | |
| tmp_file.h | 2024-10-03 15:51 | 3.6K | |
| version.sh | 2024-10-03 15:51 | 1.5K | |