qiime2R
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘qiime2R’ version 0.99.6
Help Pages
| corner | Utility Functions |
| decode_golay | Functions for decoding golay barcodes |
| filter_features | Filter low abundance features from a table. |
| interactive_table | Display an interactive table |
| is_q2metadata | checks if metadata is in qiime2 (.tsv) |
| make_clr | Normalization Functions |
| parse_ordination | Parse an imported q2 ordination text file |
| parse_taxonomy | Parse Q2 taxonomy |
| print_provenance | plot the provenance of a QIIME2 artifact (.qza) |
| qza_to_phyloseq | generates a phyloseq object from .qza artifacts |
| qza_to_tse | Generates a TreeSummarizedExperiment (TSE) object from .qza artifacts 'TreeSummarizedExperiment' |
| read_q2biom | read qiime2 biom file (version 2.1) |
| read_q2metadata | read qiime2 metadata (.tsv) |
| read_qza | read qiime2 artifacts (.qza) |
| subsample_table | subsample_table |
| summarize_taxa | summarize_taxa |
| taxa_barplot | taxa_barplot |
| taxa_heatmap | taxa_heatmap |
| theme_q2r | A ggplot2 theme for publication-style figures |
| write_q2manifest | Generates a read manifest for importing sequencing data into qiime2 |