Package: biomformat Version: 1.34.0 Date: 2023-08-01 Maintainer: Paul J. McMurdie License: GPL-2 Title: An interface package for the BIOM file format Type: Package Author: Paul J. McMurdie and Joseph N Paulson BugReports: https://github.com/joey711/biomformat/issues URL: https://github.com/joey711/biomformat/, http://biom-format.org/ Description: This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods. Imports: plyr (>= 1.8), jsonlite (>= 0.9.16), Matrix (>= 1.2), rhdf5 Depends: R (>= 3.2), methods Suggests: testthat (>= 0.10), knitr (>= 1.10), BiocStyle (>= 1.6), rmarkdown (>= 0.7) VignetteBuilder: knitr Collate: 'allClasses.R' 'allPackage.R' 'IO-methods.R' 'BIOM-class.R' 'validity-methods.R' biocViews: ImmunoOncology, DataImport, Metagenomics, Microbiome NeedsCompilation: no git_url: https://git.bioconductor.org/packages/biomformat git_branch: RELEASE_3_20 git_last_commit: dd89a53 git_last_commit_date: 2024-10-29 Repository: Bioconductor 3.20 Date/Publication: 2024-10-29 Packaged: 2024-10-29 23:44:10 UTC; biocbuild Built: R 4.4.2; ; 2025-02-03 15:50:45 UTC; unix