Manipulate DNA Sequences in Bit-Level Format
Construction of Consensus Distance Matrix With SDM
Alignment Explorer With Multiple Devices
Conversion Among DNA Sequence Internal Formats
Split Frequencies and Conversion Among Split Classes
Conversion Between Phylo and Matching Objects
Conversion Among Tree and Network Objects
Conversion from Taxonomy Variables to Phylogenetic Trees
Balance of a Dichotomous Phylogenetic Tree
Extended Version of the Birth-Death Models to Estimate Speciation and Extinction Rates
Phylogenetic Generalized Linear Mixed Model for Binary Data
Tree Estimation Based on an Improved Version of the NJ Algorithm
Phylogeny of the Families of Birds From Sibley and Ahlquist
Phylogeny of the Orders of Birds From Sibley and Ahlquist
Estimation of Speciation and Extinction Rates With Birth-Death Models
Tree Bipartition and Bootstrapping Phylogenies
Carnivora body sizes and life history traits
Number of Cherries and Null Models of Trees
Molecular Dating With Penalized Likelihood
Molecular Dating by Penalised Likelihood and Maximum Likelihood
Multiple Sequence Alignment with External Applications
Ornstein-Uhlenbeck Model for Continuous Characters
Pairwise Distances from a Phylogenetic Tree
Plots two phylogenetic trees face to face with links between the tips.
Correlations among Multiple Traits with Phylogenetic Signal
Probability Density Under Birth-Death Models
Definition of Vectors for Plotting or Annotating
Delete Alignment Gaps in DNA or AA Sequences
Analysis of Diversification with Survival Models
Incomplete distances and edge weights of unrooted topology
Tree Estimation Based on the Minimum Evolution Algorithm
Phylogenetic Tree of 193 HIV-1 Sequences
Graphical Identification of Nodes and Tips
Plot Multiple Chronograms on the Same Scale
Leading and Trailing Alignment Gaps to N
Mantel Test for Similarity of Two Matrices
McConway-Sims Test of Homogeneous Diversification
Reversible Jump MCMC to Infer Demographic History
Find Most Recent Common Ancestors Between Pairs
Tree Reconstruction from Incomplete Distances With NJ* or bio-NJ*
Labelling the Nodes, Tips, and Edges of a Tree
Extra Fuctions to Plot and Annotate Phylogenies
Read DNA Sequences from GenBank via Internet
Test of Diversification-Shift With the Yule Process
Tree Simulation Under the Time-Dependent Birth-Death Models
Skyline Plot Estimate of Effective Population Size
Slowinski-Guyer Test of Homogeneous Diversification
Zoom on a Portion of a Phylogeny by Successive Clicks
Translation from DNA to Amino Acid Sequences
Tree Reconstruction Based on the Triangles Method
Variance Components with Orthonormal Contrasts
Phylogenetic Variance-covariance or Correlation Matrix
Fits the Yule Model to a Phylogenetic Tree