Representation and manipulation of genomic intervals
The ability to efficiently represent and manipulate genomic
	annotations and alignments is playing a central role when it comes
	to analyzing high-throughput sequencing data (a.k.a. NGS data).
	The GenomicRanges package defines general purpose containers for
	storing and manipulating genomic intervals and variables defined along
	a genome. More specialized containers for representing and manipulating
	short alignments against a reference genome, or a matrix-like
	summarization of an experiment, are defined in the GenomicAlignments
	and SummarizedExperiment packages, respectively. Both packages build
	on top of the GenomicRanges infrastructure.
Genetics, Infrastructure, DataRepresentation, Sequencing,
Annotation, GenomeAnnotation, Coverage
c(
	person("Patrick", "Aboyoun", role="aut"),
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"),
	person("Michael", "Lawrence", role="aut"),
	person("Sonali", "Arora", role="ctb"),
	person("Martin", "Morgan", role="ctb"),
	person("Kayla", "Morrell", role="ctb"),
	person("Valerie", "Obenchain", role="ctb"),
	person("Marcel", "Ramos", role="ctb"),
	person("Lori", "Shepherd", role="ctb"),
	person("Dan", "Tenenbaum", role="ctb"),
	person("Daniel", "van Twisk", role="ctb"))
Matrix, Biobase, AnnotationDbi, annotate, Biostrings (>=
2.25.3), SummarizedExperiment (>= 0.1.5), Rsamtools (>=
1.13.53), GenomicAlignments, rtracklayer, BSgenome,
GenomicFeatures, txdbmaker, Gviz, VariantAnnotation,
AnnotationHub, DESeq2, DEXSeq, edgeR, KEGGgraph,
RNAseqData.HNRNPC.bam.chr14, pasillaBamSubset, KEGGREST,
hgu95av2.db, hgu95av2probe, BSgenome.Scerevisiae.UCSC.sacCer2,
BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
TxDb.Athaliana.BioMart.plantsmart22,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, RUnit, digest, knitr,
rmarkdown, BiocStyle
normarg-utils.R utils.R phicoef.R transcript-utils.R
constraint.R strand-utils.R genomic-range-squeezers.R
GenomicRanges-class.R GenomicRanges-comparison.R
GRanges-class.R GPos-class.R GRangesFactor-class.R
DelegatingGenomicRanges-class.R GNCList-class.R
GenomicRangesList-class.R GRangesList-class.R
makeGRangesFromDataFrame.R makeGRangesListFromDataFrame.R
RangedData-methods.R findOverlaps-methods.R
intra-range-methods.R inter-range-methods.R coverage-methods.R
setops-methods.R subtract-methods.R nearest-methods.R
absoluteRanges.R tileGenome.R tile-methods.R genomicvars.R
zzz.R
Patrick Aboyoun [aut],
  Hervé Pagès [aut, cre],
  Michael Lawrence [aut],
  Sonali Arora [ctb],
  Martin Morgan [ctb],
  Kayla Morrell [ctb],
  Valerie Obenchain [ctb],
  Marcel Ramos [ctb],
  Lori Shepherd [ctb],
  Dan Tenenbaum [ctb],
  Daniel van Twisk [ctb]