A unified framework for working transparently with on-disk and in-memory array-like datasets

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Documentation for package ‘DelayedArray’ version 0.32.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

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A B C D E G I L M N O P Q R S T U V W misc

-- A --

acbind-method	Common operations on DelayedArray objects
all-method	Operate natively on SparseArraySeed objects
any-method	Operate natively on SparseArraySeed objects
anyNA-method	Common operations on DelayedArray objects
anyNA-method	Operate natively on SparseArraySeed objects
aperm-method	DelayedArray objects
aperm-method	SparseArraySeed objects
aperm.DelayedArray	DelayedArray objects
aperm.SparseArraySeed	SparseArraySeed objects
apply	Common operations on DelayedArray objects
apply-method	Common operations on DelayedArray objects
arbind-method	Common operations on DelayedArray objects
arrayRealizationSink-class	RealizationSink objects
as.array-method	SparseArraySeed objects
as.array.SparseArraySeed	SparseArraySeed objects
as.matrix-method	SparseArraySeed objects
as.matrix.SparseArraySeed	SparseArraySeed objects
AutoBlock-global-settings	Control the geometry of automatic blocks
AutoGrid	Create automatic grids to use for block processing of array-like objects
AutoRealizationSink	RealizationSink objects

-- B --

bindROWS-method	Common operations on DelayedArray objects
block processing	blockApply() and family
blockApply	blockApply() and family
blockGrid	Create automatic grids to use for block processing of array-like objects
blockReduce	blockApply() and family
block_processing	blockApply() and family
BLOCK_write_to_sink	Realize an object in memory or on disk

-- C --

c-method	DelayedArray objects
capped_volume_boxes	Utilities to make capped volume boxes
cbind	Common operations on DelayedArray objects
cbind-method	Common operations on DelayedArray objects
cbind-method	Operate natively on SparseArraySeed objects
ChunkedRleArraySeed	RleArraySeed objects
ChunkedRleArraySeed-class	RleArraySeed objects
class:arrayRealizationSink	RealizationSink objects
class:ChunkedRleArraySeed	RleArraySeed objects
class:ConstantArray	A DelayedArray subclass that contains a constant value
class:ConstantArraySeed	A DelayedArray subclass that contains a constant value
class:ConstantMatrix	A DelayedArray subclass that contains a constant value
class:DelayedAbind	DelayedAbind objects
class:DelayedAperm	DelayedAperm objects
class:DelayedArray	DelayedArray objects
class:DelayedArray1	DelayedArray objects
class:DelayedMatrix	DelayedArray objects
class:DelayedNaryIsoOp	DelayedNaryIsoOp objects
class:DelayedNaryOp	DelayedOp objects
class:DelayedOp	DelayedOp objects
class:DelayedSetDimnames	DelayedSetDimnames objects
class:DelayedSubassign	DelayedSubassign objects
class:DelayedSubset	DelayedSubset objects
class:DelayedUnaryIsoOp	DelayedOp objects
class:DelayedUnaryIsoOpStack	DelayedUnaryIsoOpStack objects
class:DelayedUnaryIsoOpWithArgs	DelayedUnaryIsoOpWithArgs objects
class:DelayedUnaryOp	DelayedOp objects
class:RealizationSink	RealizationSink objects
class:RleArray	RleArray objects
class:RleArraySeed	RleArraySeed objects
class:RleMatrix	RleArray objects
class:RleRealizationSink	RleArraySeed objects
class:SolidRleArraySeed	RleArraySeed objects
class:SparseArraySeed	SparseArraySeed objects
close-method	RealizationSink objects
coerce-method	A DelayedArray subclass that contains a constant value
coerce-method	DelayedArray objects
coerce-method	RealizationSink objects
coerce-method	RleArray objects
coerce-method	RleArraySeed objects
coerce-method	SparseArraySeed objects
colAutoGrid	Create automatic grids to use for block processing of array-like objects
colGrid	Create automatic grids to use for block processing of array-like objects
colMaxs	DelayedMatrix row/col summarization
colMaxs-method	DelayedMatrix row/col summarization
colMeans	DelayedMatrix row/col summarization
colMeans-method	DelayedMatrix row/col summarization
colMins	DelayedMatrix row/col summarization
colMins-method	DelayedMatrix row/col summarization
colRanges	DelayedMatrix row/col summarization
colRanges-method	DelayedMatrix row/col summarization
colsum	rowsum() and colsum() on a DelayedMatrix object
colsum-method	rowsum() and colsum() on a DelayedMatrix object
colSums	DelayedMatrix row/col summarization
colSums-method	DelayedMatrix row/col summarization
colVars	DelayedMatrix row/col summarization
colVars-method	DelayedMatrix row/col summarization
ConstantArray	A DelayedArray subclass that contains a constant value
ConstantArray-class	A DelayedArray subclass that contains a constant value
ConstantArraySeed	A DelayedArray subclass that contains a constant value
ConstantArraySeed-class	A DelayedArray subclass that contains a constant value
ConstantMatrix	A DelayedArray subclass that contains a constant value
ConstantMatrix-class	A DelayedArray subclass that contains a constant value
contentIsPristine	Simplify a tree of delayed operations
crossprod	DelayedMatrix multiplication and cross-product
crossprod-method	DelayedMatrix multiplication and cross-product
currentBlockId	blockApply() and family
currentViewport	blockApply() and family

-- D --

dbinom	Statistical functions on DelayedArray objects
dbinom-method	Statistical functions on DelayedArray objects
defaultAutoGrid	Create automatic grids to use for block processing of array-like objects
defaultSinkAutoGrid	Create automatic grids to use for block processing of array-like objects
DelayedAbind	DelayedAbind objects
DelayedAbind-class	DelayedAbind objects
DelayedAperm	DelayedAperm objects
DelayedAperm-class	DelayedAperm objects
DelayedArray	DelayedArray objects
DelayedArray-class	DelayedArray objects
DelayedArray-method	A DelayedArray subclass that contains a constant value
DelayedArray-method	DelayedArray objects
DelayedArray-method	RleArray objects
DelayedArray-stats	Statistical functions on DelayedArray objects
DelayedArray-utils	Common operations on DelayedArray objects
DelayedArray1	DelayedArray objects
DelayedArray1-class	DelayedArray objects
DelayedMatrix	DelayedArray objects
DelayedMatrix-class	DelayedArray objects
DelayedMatrix-mult	DelayedMatrix multiplication and cross-product
DelayedMatrix-rowsum	rowsum() and colsum() on a DelayedMatrix object
DelayedNaryIsoOp	DelayedNaryIsoOp objects
DelayedNaryIsoOp-class	DelayedNaryIsoOp objects
DelayedNaryOp	DelayedOp objects
DelayedNaryOp-class	DelayedOp objects
DelayedOp	DelayedOp objects
DelayedOp-class	DelayedOp objects
DelayedSetDimnames	DelayedSetDimnames objects
DelayedSetDimnames-class	DelayedSetDimnames objects
DelayedSubassign	DelayedSubassign objects
DelayedSubassign-class	DelayedSubassign objects
DelayedSubset	DelayedSubset objects
DelayedSubset-class	DelayedSubset objects
DelayedUnaryIsoOp	DelayedOp objects
DelayedUnaryIsoOp-class	DelayedOp objects
DelayedUnaryIsoOpStack	DelayedUnaryIsoOpStack objects
DelayedUnaryIsoOpStack-class	DelayedUnaryIsoOpStack objects
DelayedUnaryIsoOpWithArgs	DelayedUnaryIsoOpWithArgs objects
DelayedUnaryIsoOpWithArgs-class	DelayedUnaryIsoOpWithArgs objects
DelayedUnaryOp	DelayedOp objects
DelayedUnaryOp-class	DelayedOp objects
dense2sparse	SparseArraySeed objects
dim-method	DelayedAbind objects
dim-method	DelayedAperm objects
dim-method	DelayedArray objects
dim-method	DelayedNaryIsoOp objects
dim-method	DelayedOp objects
dim-method	DelayedSubset objects
dim-method	RealizationSink objects
dim-method	RleArraySeed objects
dim<--method	DelayedArray objects
dimnames-method	DelayedAbind objects
dimnames-method	DelayedAperm objects
dimnames-method	DelayedArray objects
dimnames-method	DelayedNaryIsoOp objects
dimnames-method	DelayedOp objects
dimnames-method	DelayedSetDimnames objects
dimnames-method	DelayedSubset objects
dimnames-method	RleArraySeed objects
dimnames-method	SparseArraySeed objects
dimnames<--method	DelayedArray objects
dimnames<--method	SparseArraySeed objects
dlogis	Statistical functions on DelayedArray objects
dlogis-method	Statistical functions on DelayedArray objects
dnorm	Statistical functions on DelayedArray objects
dnorm-method	Statistical functions on DelayedArray objects
dpois	Statistical functions on DelayedArray objects
dpois-method	Statistical functions on DelayedArray objects
drop-method	DelayedArray objects

-- E --

effectiveGrid	blockApply() and family
extract_array-method	A DelayedArray subclass that contains a constant value
extract_array-method	DelayedAbind objects
extract_array-method	DelayedAperm objects
extract_array-method	DelayedArray objects
extract_array-method	DelayedNaryIsoOp objects
extract_array-method	DelayedOp objects
extract_array-method	DelayedSubassign objects
extract_array-method	DelayedSubset objects
extract_array-method	DelayedUnaryIsoOpStack objects
extract_array-method	DelayedUnaryIsoOpWithArgs objects
extract_array-method	RleArraySeed objects
extract_array-method	SparseArraySeed objects
extract_sparse_array-method	A DelayedArray subclass that contains a constant value
extract_sparse_array-method	DelayedAbind objects
extract_sparse_array-method	DelayedAperm objects
extract_sparse_array-method	DelayedNaryIsoOp objects
extract_sparse_array-method	DelayedOp objects
extract_sparse_array-method	DelayedSubassign objects
extract_sparse_array-method	DelayedSubset objects
extract_sparse_array-method	DelayedUnaryIsoOpStack objects
extract_sparse_array-method	DelayedUnaryIsoOpWithArgs objects

-- G --

getAutoBlockLength	Control the geometry of automatic blocks
getAutoBlockShape	Control the geometry of automatic blocks
getAutoBlockSize	Control the geometry of automatic blocks
getAutoBPPARAM	blockApply() and family
getAutoGridMaker	Create automatic grids to use for block processing of array-like objects
getAutoRealizationBackend	RealizationSink objects
getRealizationBackend	RealizationSink objects
get_type_size	Control the geometry of automatic blocks
grepl-method	Common operations on DelayedArray objects
gridApply	blockApply() and family
gridReduce	blockApply() and family
gsub-method	Common operations on DelayedArray objects

-- I --

is.finite-method	Common operations on DelayedArray objects
is.infinite-method	Common operations on DelayedArray objects
is.infinite-method	Operate natively on SparseArraySeed objects
is.na-method	Common operations on DelayedArray objects
is.na-method	Operate natively on SparseArraySeed objects
is.nan-method	Common operations on DelayedArray objects
is.nan-method	Operate natively on SparseArraySeed objects
isLinear	Utilities to make capped volume boxes
isLinear-method	Utilities to make capped volume boxes
isPristine	Simplify a tree of delayed operations
is_noop	DelayedOp objects
is_noop-method	DelayedAbind objects
is_noop-method	DelayedAperm objects
is_noop-method	DelayedSetDimnames objects
is_noop-method	DelayedSubassign objects
is_noop-method	DelayedSubset objects
is_sparse-method	A DelayedArray subclass that contains a constant value
is_sparse-method	DelayedAbind objects
is_sparse-method	DelayedAperm objects
is_sparse-method	DelayedNaryIsoOp objects
is_sparse-method	DelayedOp objects
is_sparse-method	DelayedSubassign objects
is_sparse-method	DelayedSubset objects
is_sparse-method	DelayedUnaryIsoOpStack objects
is_sparse-method	DelayedUnaryIsoOpWithArgs objects
is_sparse-method	SparseArraySeed objects

-- L --

lengths-method	Common operations on DelayedArray objects
log-method	Common operations on DelayedArray objects

-- M --

makeCappedVolumeBox	Utilities to make capped volume boxes
makeRegularArrayGridOfCappedLengthViewports	Utilities to make capped volume boxes
matrixClass	DelayedArray objects
matrixClass-method	A DelayedArray subclass that contains a constant value
matrixClass-method	DelayedArray objects
matrixClass-method	RleArray objects
matrixStats-methods	DelayedMatrix row/col summarization
max-method	Operate natively on SparseArraySeed objects
mean	Common operations on DelayedArray objects
mean-method	Common operations on DelayedArray objects
mean-method	Operate natively on SparseArraySeed objects
mean.DelayedArray	Common operations on DelayedArray objects
mean.SparseArraySeed	Operate natively on SparseArraySeed objects
min-method	Operate natively on SparseArraySeed objects
modify_seeds	Visualize and access the leaves of a tree of delayed operations

-- N --

names-method	DelayedArray objects
names<--method	DelayedArray objects
nchar-method	Common operations on DelayedArray objects
nchar-method	Operate natively on SparseArraySeed objects
netSubsetAndAperm	Simplify a tree of delayed operations
netSubsetAndAperm-method	Simplify a tree of delayed operations
new_DelayedArray	DelayedArray objects
nseed	Visualize and access the leaves of a tree of delayed operations
nseed-method	Visualize and access the leaves of a tree of delayed operations
nzdata	SparseArraySeed objects
nzdata-method	SparseArraySeed objects
nzindex	SparseArraySeed objects
nzindex-method	SparseArraySeed objects
nzwhich-method	Common operations on DelayedArray objects

-- O --

OLD_extract_sparse_array	SparseArraySeed objects
OLD_extract_sparse_array-method	A DelayedArray subclass that contains a constant value
OLD_extract_sparse_array-method	DelayedAbind objects
OLD_extract_sparse_array-method	DelayedAperm objects
OLD_extract_sparse_array-method	DelayedNaryIsoOp objects
OLD_extract_sparse_array-method	DelayedOp objects
OLD_extract_sparse_array-method	DelayedSubassign objects
OLD_extract_sparse_array-method	DelayedSubset objects
OLD_extract_sparse_array-method	DelayedUnaryIsoOpStack objects
OLD_extract_sparse_array-method	DelayedUnaryIsoOpWithArgs objects
OLD_extract_sparse_array-method	SparseArraySeed objects

-- P --

path	Visualize and access the leaves of a tree of delayed operations
path-method	Visualize and access the leaves of a tree of delayed operations
path<--method	Visualize and access the leaves of a tree of delayed operations
pbinom	Statistical functions on DelayedArray objects
pbinom-method	Statistical functions on DelayedArray objects
plogis	Statistical functions on DelayedArray objects
plogis-method	Statistical functions on DelayedArray objects
pmax2	Common operations on DelayedArray objects
pmax2-method	Common operations on DelayedArray objects
pmin2	Common operations on DelayedArray objects
pmin2-method	Common operations on DelayedArray objects
pnorm	Statistical functions on DelayedArray objects
pnorm-method	Statistical functions on DelayedArray objects
ppois	Statistical functions on DelayedArray objects
ppois-method	Statistical functions on DelayedArray objects
prod-method	Operate natively on SparseArraySeed objects

-- Q --

qbinom	Statistical functions on DelayedArray objects
qbinom-method	Statistical functions on DelayedArray objects
qlogis	Statistical functions on DelayedArray objects
qlogis-method	Statistical functions on DelayedArray objects
qnorm	Statistical functions on DelayedArray objects
qnorm-method	Statistical functions on DelayedArray objects
qpois	Statistical functions on DelayedArray objects
qpois-method	Statistical functions on DelayedArray objects

-- R --

range	Common operations on DelayedArray objects
range-method	Common operations on DelayedArray objects
range-method	Operate natively on SparseArraySeed objects
range.DelayedArray	Common operations on DelayedArray objects
range.SparseArraySeed	Operate natively on SparseArraySeed objects
rbind	Common operations on DelayedArray objects
rbind-method	Common operations on DelayedArray objects
rbind-method	Operate natively on SparseArraySeed objects
RealizationSink	RealizationSink objects
RealizationSink-class	RealizationSink objects
realize	Realize an object in memory or on disk
realize-method	Realize an object in memory or on disk
registeredRealizationBackends	RealizationSink objects
RleArray	RleArray objects
RleArray-class	RleArray objects
RleArraySeed	RleArraySeed objects
RleArraySeed-class	RleArraySeed objects
RleMatrix	RleArray objects
RleMatrix-class	RleArray objects
RleRealizationSink	RleArraySeed objects
RleRealizationSink-class	RleArraySeed objects
round-method	Common operations on DelayedArray objects
rowAutoGrid	Create automatic grids to use for block processing of array-like objects
rowGrid	Create automatic grids to use for block processing of array-like objects
rowMaxs	DelayedMatrix row/col summarization
rowMaxs-method	DelayedMatrix row/col summarization
rowMeans	DelayedMatrix row/col summarization
rowMeans-method	DelayedMatrix row/col summarization
rowMins	DelayedMatrix row/col summarization
rowMins-method	DelayedMatrix row/col summarization
rowRanges	DelayedMatrix row/col summarization
rowRanges-method	DelayedMatrix row/col summarization
rowsum	rowsum() and colsum() on a DelayedMatrix object
rowsum-method	rowsum() and colsum() on a DelayedMatrix object
rowsum.DelayedMatrix	rowsum() and colsum() on a DelayedMatrix object
rowSums	DelayedMatrix row/col summarization
rowSums-method	DelayedMatrix row/col summarization
rowVars	DelayedMatrix row/col summarization
rowVars-method	DelayedMatrix row/col summarization

-- S --

scale	Common operations on DelayedArray objects
scale-method	Common operations on DelayedArray objects
scale.DelayedMatrix	Common operations on DelayedArray objects
seed	Visualize and access the leaves of a tree of delayed operations
seed-method	Visualize and access the leaves of a tree of delayed operations
seed<-	Visualize and access the leaves of a tree of delayed operations
seed<--method	Visualize and access the leaves of a tree of delayed operations
seedApply	Visualize and access the leaves of a tree of delayed operations
setAutoBlockShape	Control the geometry of automatic blocks
setAutoBlockSize	Control the geometry of automatic blocks
setAutoBPPARAM	blockApply() and family
setAutoGridMaker	Create automatic grids to use for block processing of array-like objects
setAutoRealizationBackend	RealizationSink objects
setRealizationBackend	RealizationSink objects
set_grid_context	blockApply() and family
show-method	DelayedArray objects
show-method	Visualize and access the leaves of a tree of delayed operations
showtree	Visualize and access the leaves of a tree of delayed operations
signif-method	Common operations on DelayedArray objects
simplify	Simplify a tree of delayed operations
simplify-method	Simplify a tree of delayed operations
sinkApply	RealizationSink objects
SolidRleArraySeed	RleArraySeed objects
SolidRleArraySeed-class	RleArraySeed objects
sparse2dense	SparseArraySeed objects
SparseArraySeed	SparseArraySeed objects
SparseArraySeed-class	SparseArraySeed objects
SparseArraySeed-utils	Operate natively on SparseArraySeed objects
split-method	DelayedArray objects
split.DelayedArray	DelayedArray objects
splitAsList-method	DelayedArray objects
sub-method	Common operations on DelayedArray objects
sum-method	Operate natively on SparseArraySeed objects
summary-method	DelayedAbind objects
summary-method	DelayedAperm objects
summary-method	DelayedNaryIsoOp objects
summary-method	DelayedOp objects
summary-method	DelayedSetDimnames objects
summary-method	DelayedSubassign objects
summary-method	DelayedSubset objects
summary-method	DelayedUnaryIsoOpStack objects
summary-method	DelayedUnaryIsoOpWithArgs objects
summary.DelayedAbind	DelayedAbind objects
summary.DelayedAperm	DelayedAperm objects
summary.DelayedNaryIsoOp	DelayedNaryIsoOp objects
summary.DelayedOp	DelayedOp objects
summary.DelayedSetDimnames	DelayedSetDimnames objects
summary.DelayedSubassign	DelayedSubassign objects
summary.DelayedSubset	DelayedSubset objects
summary.DelayedUnaryIsoOpStack	DelayedUnaryIsoOpStack objects
summary.DelayedUnaryIsoOpWithArgs	DelayedUnaryIsoOpWithArgs objects
supportedRealizationBackends	RealizationSink objects
sweep	Common operations on DelayedArray objects
sweep-method	Common operations on DelayedArray objects

-- T --

table	Common operations on DelayedArray objects
table-method	Common operations on DelayedArray objects
tcrossprod	DelayedMatrix multiplication and cross-product
tcrossprod-method	DelayedMatrix multiplication and cross-product
tolower-method	Common operations on DelayedArray objects
tolower-method	Operate natively on SparseArraySeed objects
toupper-method	Common operations on DelayedArray objects
toupper-method	Operate natively on SparseArraySeed objects
type	DelayedArray objects
type-method	RleArraySeed objects
type<--method	Common operations on DelayedArray objects

-- U --

unique	Common operations on DelayedArray objects
unique-method	Common operations on DelayedArray objects
unique.DelayedArray	Common operations on DelayedArray objects
updateObject-method	DelayedAbind objects
updateObject-method	DelayedAperm objects
updateObject-method	DelayedArray objects
updateObject-method	DelayedNaryIsoOp objects
updateObject-method	DelayedOp objects
updateObject-method	DelayedSetDimnames objects

-- V --

viewportApply	blockApply() and family
viewportReduce	blockApply() and family

-- W --

which-method	Common operations on DelayedArray objects
which-method	Operate natively on SparseArraySeed objects
write_block-method	RealizationSink objects
write_block-method	RleArray objects

-- misc --

!-method	Common operations on DelayedArray objects
%*%	DelayedMatrix multiplication and cross-product
%*%-method	DelayedMatrix multiplication and cross-product
+-method	Common operations on DelayedArray objects
--method	Common operations on DelayedArray objects
[-method	DelayedArray objects
[<--method	DelayedArray objects
[[-method	DelayedArray objects