Efficient manipulation of biological strings
Memory efficient string containers, string matching
	algorithms, and other utilities, for fast manipulation of large
	biological sequences or sets of sequences.
SequenceMatching, Alignment, Sequencing, Genetics,
DataImport, DataRepresentation, Infrastructure
c(
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"),
	person("Patrick", "Aboyoun", role="aut"),
	person("Robert", "Gentleman", role="aut"),
	person("Saikat", "DebRoy", role="aut"),
	person("Vince", "Carey", role="ctb"),
	person("Nicolas", "Delhomme", role="ctb"),
	person("Felix", "Ernst", role="ctb"),
	person("Wolfgang", "Huber", role="ctb",
	       comment="'matchprobes' vignette"),
	person("Beryl", "Kanali", role="ctb",
	       comment="Converted 'MultipleAlignments' vignette from Sweave to RMarkdown"),
	person("Haleema", "Khan", role="ctb",
	       comment="Converted 'matchprobes' vignette from Sweave to RMarkdown"),
	person("Aidan", "Lakshman", role="ctb"),
	person("Kieran", "O'Neill", role="ctb"),
	person("Valerie", "Obenchain", role="ctb"),
	person("Marcel", "Ramos", role="ctb"),
	person("Albert", "Vill", role="ctb"),
	person("Jen", "Wokaty", role="ctb",
	       comment="Converted 'matchprobes' vignette from Sweave to RMarkdown"),
	person("Erik", "Wright", role="ctb"))
methods, utils, grDevices, stats, crayon
graphics, pwalign, BSgenome (>= 1.13.14),
BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe,
hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy
(>= 1.41.3), affydata (>= 1.11.5), RUnit, BiocStyle, knitr,
testthat (>= 3.0.0), covr
utils.R IUPAC_CODE_MAP.R AMINO_ACID_CODE.R GENETIC_CODE.R
XStringCodec-class.R seqtype.R coloring.R XString-class.R
XStringSet-class.R XStringSet-comparison.R XStringViews-class.R
MaskedXString-class.R XStringSetList-class.R seqinfo-methods.R
xscat.R XStringSet-io.R letter.R getSeq.R letterFrequency.R
dinucleotideFrequencyTest.R chartr.R reverseComplement.R
translate.R toComplex.R replaceAt.R replaceLetterAt.R
injectHardMask.R padAndClip.R strsplit-methods.R misc.R
SparseList-class.R MIndex-class.R lowlevel-matching.R
match-utils.R matchPattern.R maskMotif.R matchLRPatterns.R
trimLRPatterns.R matchProbePair.R matchPWM.R findPalindromes.R
PDict-class.R matchPDict.R XStringPartialMatches-class.R
XStringQuality-class.R QualityScaledXStringSet.R
pmatchPattern.R needwunsQS.R MultipleAlignment.R matchprobes.R
moved_to_pwalign.R zzz.R
Hervé Pagès [aut, cre],
  Patrick Aboyoun [aut],
  Robert Gentleman [aut],
  Saikat DebRoy [aut],
  Vince Carey [ctb],
  Nicolas Delhomme [ctb],
  Felix Ernst [ctb],
  Wolfgang Huber [ctb] ('matchprobes' vignette),
  Beryl Kanali [ctb] (Converted 'MultipleAlignments' vignette from Sweave
    to RMarkdown),
  Haleema Khan [ctb] (Converted 'matchprobes' vignette from Sweave to
    RMarkdown),
  Aidan Lakshman [ctb],
  Kieran O'Neill [ctb],
  Valerie Obenchain [ctb],
  Marcel Ramos [ctb],
  Albert Vill [ctb],
  Jen Wokaty [ctb] (Converted 'matchprobes' vignette from Sweave to
    RMarkdown),
  Erik Wright [ctb]