Microbiome differential abudance and correlation analyses with bias correction


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Documentation for package ‘ANCOMBC’ version 2.8.1

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ancom Analysis of Composition of Microbiomes (ANCOM)
ancombc Analysis of Compositions of Microbiomes with Bias Correction (ANCOM-BC)
ancombc2 Analysis of Compositions of Microbiomes with Bias Correction 2 (ANCOM-BC2)
data_sanity_check Data Sanity and Integrity Check
QMP Quantitative Microbiome Project data
secom_dist Sparse estimation of distance correlations among microbiomes
secom_linear Sparse estimation of linear correlations among microbiomes
sim_plnm Simulate Microbial Absolute Abundance Data by Poisson lognormal (PLN) model Based on a Real Dataset