AdapterRemoval ver. 2.1.7 Trimming of single-end reads [Adapter sequences] Adapter1[1]: AGATCGGAAGAGCACACGTCTGAACTCCAGTCACNNNNNNATCTCGTATGCCGTCTTCTGCTTG Adapter2[1]: AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT [Adapter trimming] RNG seed: 120751608 Alignment shift value: 2 Global mismatch threshold: 0.333333 Quality format (input): Phred+33 Quality score max (input): 41 Quality format (output): Phred+33 Quality score max (output): 41 Mate-number separator (input): '/' Trimming 5p: 0 Trimming 3p: 0 Trimming Ns: No Trimming Phred scores <= 2: No Trimming using sliding windows: No Minimum genomic length: 0 Maximum genomic length: 4294967295 Collapse overlapping reads: No Minimum overlap (in case of collapse): 11 Minimum adapter overlap: 0 [Trimming statistics] Total number of reads: 1 Number of unaligned reads: 0 Number of well aligned reads: 1 Number of discarded mate 1 reads: 0 Number of singleton mate 1 reads: 1 Number of reads with adapters[1]: 1 Number of retained reads: 1 Number of retained nucleotides: 0 Average length of retained reads: 0 [Length distribution] Length Mate1 Discarded All 0 1 0 1