AdapterRemoval ver. 2.3.0
Trimming of paired-end reads


[Adapter sequences]
Adapter1[1]: AGATCGGAAGAGCACACGTCTGAACTCCAGTCACNNNNNNATCTCGTATGCCGTCTTCTGCTTG
Adapter2[1]: AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT


[Adapter trimming]
RNG seed: 1718079106
Alignment shift value: 2
Global mismatch threshold: 0.333333
Quality format (input): Phred+33
Quality score max (input): 41
Quality format (output): Phred+33
Quality score max (output): 41
Mate-number separator (input): '/'
Trimming 5p: 0
Trimming 3p: 0
Trimming Ns: Yes
Trimming Phred scores <= 2: Yes
Trimming using sliding windows: No
Minimum genomic length: 15
Maximum genomic length: 4294967295
Collapse overlapping reads: Yes
Minimum overlap (in case of collapse): 11


[Trimming statistics]
Total number of read pairs: 6
Number of unaligned read pairs: 5
Number of well aligned read pairs: 1
Number of discarded mate 1 reads: 0
Number of singleton mate 1 reads: 0
Number of discarded mate 2 reads: 0
Number of singleton mate 2 reads: 0
Number of reads with adapters[1]: 0
Number of full-length collapsed pairs: 1
Number of truncated collapsed pairs: 0
Number of retained reads: 11
Number of retained nucleotides: 535
Average length of retained reads: 48.6364


[Length distribution]
Length	Mate1	Mate2	Singleton	Collapsed	CollapsedTruncated	Discarded	All
0	0	0	0	0	0	0	0
1	0	0	0	0	0	0	0
2	0	0	0	0	0	0	0
3	0	0	0	0	0	0	0
4	0	0	0	0	0	0	0
5	0	0	0	0	0	0	0
6	0	0	0	0	0	0	0
7	0	0	0	0	0	0	0
8	0	0	0	0	0	0	0
9	0	0	0	0	0	0	0
10	0	0	0	0	0	0	0
11	0	0	0	0	0	0	0
12	0	0	0	0	0	0	0
13	0	0	0	0	0	0	0
14	0	0	0	0	0	0	0
15	0	0	0	0	0	0	0
16	0	0	0	0	0	0	0
17	0	0	0	0	0	0	0
18	0	0	0	0	0	0	0
19	0	0	0	0	0	0	0
20	0	0	0	0	0	0	0
21	0	0	0	0	0	0	0
22	0	0	0	0	0	0	0
23	0	0	0	0	0	0	0
24	0	0	0	0	0	0	0
25	0	0	0	0	0	0	0
26	0	0	0	0	0	0	0
27	0	0	0	0	0	0	0
28	0	0	0	0	0	0	0
29	0	0	0	0	0	0	0
30	0	0	0	0	0	0	0
31	0	0	0	0	0	0	0
32	0	0	0	0	0	0	0
33	0	0	0	0	0	0	0
34	0	0	0	0	0	0	0
35	0	0	0	0	0	0	0
36	0	0	0	0	0	0	0
37	0	0	0	0	0	0	0
38	0	0	0	0	0	0	0
39	0	0	0	0	0	0	0
40	2	2	0	0	0	0	4
41	0	0	0	0	0	0	0
42	0	0	0	0	0	0	0
43	0	0	0	0	0	0	0
44	0	0	0	0	0	0	0
45	0	0	0	0	0	0	0
46	0	0	0	0	0	0	0
47	0	0	0	0	0	0	0
48	0	0	0	0	0	0	0
49	0	0	0	0	0	0	0
50	3	3	0	0	0	0	6
51	0	0	0	0	0	0	0
52	0	0	0	0	0	0	0
53	0	0	0	0	0	0	0
54	0	0	0	0	0	0	0
55	0	0	0	0	0	0	0
56	0	0	0	0	0	0	0
57	0	0	0	0	0	0	0
58	0	0	0	0	0	0	0
59	0	0	0	0	0	0	0
60	0	0	0	0	0	0	0
61	0	0	0	0	0	0	0
62	0	0	0	0	0	0	0
63	0	0	0	0	0	0	0
64	0	0	0	0	0	0	0
65	0	0	0	0	0	0	0
66	0	0	0	0	0	0	0
67	0	0	0	0	0	0	0
68	0	0	0	0	0	0	0
69	0	0	0	0	0	0	0
70	0	0	0	0	0	0	0
71	0	0	0	0	0	0	0
72	0	0	0	0	0	0	0
73	0	0	0	0	0	0	0
74	0	0	0	0	0	0	0
75	0	0	0	1	0	0	1