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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| Braken_Heatmap.R | 2024-06-28 12:22 | 6.3K | |
| README.md | 2024-06-11 15:04 | 6.3K | |
| align-plastids.sh | 2024-06-11 15:04 | 1.5K | |
| align.sh | 2024-06-11 15:04 | 2.0K | |
| analysis-1.sh | 2024-06-11 15:04 | 445 | |
| archive-analysis-1.sh | 2024-06-11 15:04 | 330 | |
| archive-workflow-1.sh | 2024-06-11 15:04 | 746 | |
| clean-workflow-1.sh | 2024-06-11 15:04 | 253 | |
| collapse-lanes.sh | 2024-06-11 15:04 | 453 | |
| config_file | 2024-06-11 15:04 | 1.6K | |
| count-sequences.py | 2024-06-11 15:04 | 220 | |
| dating-1.sh | 2024-06-11 15:04 | 1.1K | |
| dedupe.sh | 2024-06-11 15:04 | 1.4K | |
| dust.sh | 2024-06-11 15:04 | 1.5K | |
| extract-species-sam.py | 2024-11-26 15:03 | 1.4K | |
| getLCA-master.zip | 2024-06-11 15:04 | 7.0K | |
| getLCA-master/ | 2024-06-11 15:04 | - | |
| getLCA-plastids.sh | 2024-06-11 15:04 | 749 | |
| getLCA.sh | 2024-06-11 15:04 | 943 | |
| guess-encoding.py | 2024-06-11 15:04 | 1.9K | |
| id-adapters.sh | 2024-06-11 15:04 | 2.9K | |
| make-bam-from-sam.sh | 2024-11-26 15:03 | 957 | |
| make-bowtie2-commands.sh | 2024-11-26 15:03 | 858 | |
| make-fastp-commands.sh | 2024-11-26 15:03 | 279 | |
| parse-stats.py | 2024-06-11 15:04 | 209 | |
| phyloseq_aDNA_analysis_SFM | 2024-11-26 15:03 | 16K | |
| plot-sample-pmd.py | 2024-06-11 15:04 | 1.5K | |
| plot-species-pmd-separate-graphs.py | 2024-06-11 15:04 | 3.0K | |
| plot-species-pmd.py | 2024-06-11 15:04 | 2.6K | |
| print-read-counts.sh | 2024-06-11 15:04 | 1.1K | |
| remove-adapters-join.sh | 2024-06-11 15:04 | 4.4K | |
| report-plastids.sh | 2024-06-11 15:04 | 2.0K | |
| report.sh | 2024-06-11 15:04 | 2.0K | |
| sample-spot-species-pmd.py | 2024-06-11 15:04 | 2.4K | |
| sort-plastids.sh | 2024-06-11 15:04 | 909 | |
| sort-samples.py | 2024-06-11 15:04 | 2.1K | |
| sort.sh | 2024-06-11 15:04 | 1.0K | |
| stats-deduped.sh | 2024-06-11 15:04 | 799 | |
| stats-dusted.sh | 2024-06-11 15:04 | 703 | |
| stats-joined.sh | 2024-06-11 15:04 | 618 | |
| stats-raw.sh | 2024-06-11 15:04 | 2.7K | |
| submit-analysis-1.qsub | 2024-06-11 15:04 | 410 | |
| submit-analysis-1.sbatch | 2024-06-11 15:04 | 574 | |
| submit-both-1.qsub | 2024-06-11 15:04 | 509 | |
| submit-both-1.sbatch | 2024-06-11 15:04 | 646 | |
| submit-workflow-1.qsub | 2024-06-11 15:04 | 455 | |
| submit-workflow-1.sbatch | 2024-06-11 15:04 | 600 | |
| workflow-1.sh | 2024-06-11 15:04 | 683 | |