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"GTGTT":156737, "GTGTC":140315, "GTGTG":201637, "GTGCA":198573, "GTGCT":135444, "GTGCC":125833, "GTGCG":63018, "GTGGA":168248, "GTGGT":148487, "GTGGC":192464, "GTGGG":224902, "GCAAA":175354, "GCAAT":132878, "GCAAC":114853, "GCAAG":155677, "GCATA":89246, "GCATT":145706, "GCATC":144532, "GCATG":220626, "GCACA":271330, "GCACT":174781, "GCACC":123514, "GCACG":64175, "GCAGA":213784, "GCAGT":157099, "GCAGC":203928, "GCAGG":268803, "GCTAA":83605, "GCTAT":95974, "GCTAC":77786, "GCTAG":60665, "GCTTA":80221, "GCTTT":181759, "GCTTC":182823, "GCTTG":134704, "GCTCA":213332, "GCTCT":165331, "GCTCC":178937, "GCTCG":66470, "GCTGA":215203, "GCTGT":153916, "GCTGC":207864, "GCTGG":214639, "GCCAA":144555, "GCCAT":154385, "GCCAC":189551, "GCCAG":196314, "GCCTA":75957, "GCCTT":141702, "GCCTC":230816, "GCCTG":263567, "GCCCA":164459, "GCCCT":159538, "GCCCC":180329, "GCCCG":85095, "GCCGA":49599, "GCCGT":54391, "GCCGC":95187, "GCCGG":87485, "GCGAA":42809, "GCGAT":50187, "GCGAC":90640, "GCGAG":73816, 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"GC":[0.469107,0.499186,0.479826,0.484195,0.479203,0.479583,0.481254,0.47976,0.480543,0.480707,0.482753,0.478776,0.481225,0.479489,0.478293,0.478128,0.479883,0.478428,0.479129,0.480173,0.479306,0.480433,0.477499,0.478081,0.480094,0.479094,0.478369,0.479622,0.478963,0.481135,0.478859,0.479583,0.478972,0.477637,0.478988,0.478695,0.477703,0.479539,0.478516,0.480272,0.479525,0.478742,0.477708,0.47882,0.479821,0.47732,0.478457,0.479937,0.479061,0.478896,0.479828,0.480581,0.478133,0.47878,0.478478,0.478782,0.479558,0.479524,0.480038,0.4806,0.479825,0.480879,0.479513,0.480349,0.480031,0.478724,0.479483,0.480137,0.479998,0.479402,0.480051,0.479661,0.480862,0.479041,0.479903,0.479946,0.478932,0.47918,0.480024,0.479196,0.480927,0.481782,0.480879,0.479732,0.480318,0.47875,0.480404,0.479126,0.478601,0.480683,0.480416,0.481294,0.479962,0.48095,0.480251,0.479717,0.478494,0.480863,0.479065,0.479965,0.480232,0.481743,0.480036,0.48139,0.480821,0.480958,0.480481,0.479744,0.480211,0.480439,0.479685,0.481638,0.48193,0.479168,0.479388,0.480297,0.48019,0.480403,0.480099,0.48097,0.481017,0.480965,0.481351,0.482509,0.482173,0.481325,0.481647,0.482152,0.481277,0.482882,0.481944,0.483,0.48221,0.48413,0.483737,0.482925,0.484399,0.483952,0.483583,0.484944,0.485712,0.48572,0.485857,0.4858,0.485648,0.487348,0.486567,0.487328,0.487727,0.48702] 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"CTGTT":168667, "CTGTC":186575, "CTGTG":234030, "CTGCA":261506, "CTGCT":249096, "CTGCC":239662, "CTGCG":74750, "CTGGA":310210, "CTGGT":171747, "CTGGC":190509, "CTGGG":293809, "CCAAA":202053, "CCAAT":138768, "CCAAC":143538, "CCAAG":176719, "CCATA":104260, "CCATT":157512, "CCATC":179605, "CCATG":246229, "CCACA":185314, "CCACT":182991, "CCACC":205868, "CCACG":131983, "CCAGA":230338, "CCAGT":206164, "CCAGC":212352, "CCAGG":331916, "CCTAA":91499, "CCTAT":71141, "CCTAC":82528, "CCTAG":96594, "CCTTA":83516, "CCTTT":197693, "CCTTC":224778, "CCTTG":164775, "CCTCA":211037, "CCTCT":269113, "CCTCC":246374, "CCTCG":97186, "CCTGA":229998, "CCTGT":182070, "CCTGC":263140, "CCTGG":329348, "CCCAA":153471, "CCCAT":166624, "CCCAC":208639, "CCCAG":296976, "CCCTA":79680, "CCCTT":179672, "CCCTC":207539, "CCCTG":295193, "CCCCA":244682, "CCCCT":204492, "CCCCC":221924, "CCCCG":136206, "CCCGA":88779, "CCCGT":65127, "CCCGC":102206, "CCCGG":130785, "CCGAA":48593, "CCGAT":43438, "CCGAC":62222, "CCGAG":78357, 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"CGGTC":58663, "CGGTG":76289, "CGGCA":67789, "CGGCT":59223, "CGGCC":82923, "CGGCG":80530, "CGGGA":103118, "CGGGT":66734, "CGGGC":85768, "CGGGG":142964, "GAAAA":321247, "GAAAT":226796, "GAAAC":160989, "GAAAG":312951, "GAATA":136597, "GAATT":165622, "GAATC":143614, "GAATG":172674, "GAACA":170782, "GAACT":159594, "GAACC":136512, "GAACG":41541, "GAAGA":383053, "GAAGT":155254, "GAAGC":182237, "GAAGG":231429, "GATAA":111374, "GATAT":104353, "GATAC":75583, "GATAG":86890, "GATTA":91172, "GATTT":171676, "GATTC":140817, "GATTG":108188, "GATCA":419858, "GATCT":160339, "GATCC":111707, "GATCG":202815, "GATGA":204053, "GATGT":124441, "GATGC":145410, "GATGG":180187, "GACAA":126821, "GACAT":130109, "GACAC":139403, "GACAG":191646, "GACTA":77215, "GACTT":150477, "GACTC":178479, "GACTG":235856, "GACCA":126505, "GACCT":147147, "GACCC":149164, "GACCG":58758, "GACGA":55169, "GACGT":49412, "GACGC":50165, "GACGG":77395, "GAGAA":287025, "GAGAT":223428, "GAGAC":161417, "GAGAG":259762, "GAGTA":97292, 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"GGGAG":257194, "GGGTA":74599, "GGGTT":177301, "GGGTC":149593, "GGGTG":177695, "GGGCA":161269, "GGGCT":188983, "GGGCC":152466, "GGGCG":93810, "GGGGA":244644, "GGGGT":174540, "GGGGC":185557, "GGGGG":466848 }, "overrepresented_sequences": { } }, "merged_and_filtered": { "total_reads": 1297520, "total_bases": 219983459, "q20_bases": 214963080, "q30_bases": 206172758, "total_cycles": 269, "quality_curves": { 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"TCGTG":124560, "TCGCA":98271, "TCGCT":74663, "TCGCC":101773, "TCGCG":85535, "TCGGA":81487, "TCGGT":53649, "TCGGC":71149, "TCGGG":128957, "TGAAA":384035, "TGAAT":266211, "TGAAC":229310, "TGAAG":317834, "TGATA":212651, "TGATT":259349, "TGATC":607630, "TGATG":292893, "TGACA":215602, "TGACT":346321, "TGACC":215158, "TGACG":79908, "TGAGA":290180, "TGAGT":243148, "TGAGC":301924, "TGAGG":307861, "TGTAA":168418, "TGTAT":231742, "TGTAC":127438, "TGTAG":146155, "TGTTA":156873, "TGTTT":327469, "TGTTC":243380, "TGTTG":240015, "TGTCA":213811, "TGTCT":283113, "TGTCC":272066, "TGTCG":73606, "TGTGA":281583, "TGTGT":333839, "TGTGC":235617, "TGTGG":266436, "TGCAA":240091, "TGCAT":371118, "TGCAC":285388, "TGCAG":381265, "TGCTA":151635, "TGCTT":288083, "TGCTC":261743, "TGCTG":361232, "TGCCA":294368, "TGCCT":360019, "TGCCC":230413, "TGCCG":95864, "TGCGA":100674, "TGCGT":74000, "TGCGC":69728, "TGCGG":87510, "TGGAA":418096, "TGGAT":227573, "TGGAC":280963, "TGGAG":435634, "TGGTA":155441, "TGGTT":229495, "TGGTC":182883, "TGGTG":278080, "TGGCA":295204, "TGGCT":346662, "TGGCC":240576, "TGGCG":102621, "TGGGA":335712, "TGGGT":268388, "TGGGC":238207, "TGGGG":353288, "CAAAA":334636, "CAAAT":250201, "CAAAC":217531, "CAAAG":340867, "CAATA":195297, "CAATT":192788, "CAATC":157010, "CAATG":231947, "CAACA":244029, "CAACT":218308, "CAACC":202887, "CAACG":47263, "CAAGA":300646, "CAAGT":187276, "CAAGC":195789, "CAAGG":244758, "CATAA":162401, "CATAT":190058, "CATAC":140266, "CATAG":138398, "CATTA":157019, "CATTT":326420, "CATTC":248902, "CATTG":229675, "CATCA":291542, "CATCT":328831, "CATCC":230944, "CATCG":90585, "CATGA":394554, "CATGT":261041, "CATGC":316774, "CATGG":360171, "CACAA":239403, "CACAT":249612, "CACAC":282988, "CACAG":340666, "CACTA":117684, "CACTT":251231, "CACTC":234778, "CACTG":445699, "CACCA":280463, "CACCT":267709, "CACCC":243926, "CACCG":82956, "CACGA":124072, "CACGT":340502, "CACGC":91381, "CACGG":94026, "CAGAA":318523, "CAGAT":259426, "CAGAC":251496, "CAGAG":410762, "CAGTA":189068, "CAGTT":273941, "CAGTC":347742, "CAGTG":446873, "CAGCA":358139, "CAGCT":331175, "CAGCC":340678, "CAGCG":101302, "CAGGA":399493, "CAGGT":254997, "CAGGC":380558, "CAGGG":433643, "CTAAA":188878, "CTAAT":128422, "CTAAC":101212, "CTAAG":146338, "CTATA":123896, "CTATT":172325, "CTATC":120838, "CTATG":138695, "CTACA":146943, "CTACT":136384, "CTACC":113914, "CTACG":37989, "CTAGA":162421, "CTAGT":103492, "CTAGC":83083, "CTAGG":138057, "CTTAA":162372, "CTTAT":158276, "CTTAC":110112, "CTTAG":143718, "CTTTA":238037, "CTTTT":388238, "CTTTC":345769, "CTTTG":337101, "CTTCA":315412, "CTTCT":377264, "CTTCC":370714, "CTTCG":96050, "CTTGA":249064, "CTTGT":204496, "CTTGC":216099, "CTTGG":249132, "CTCAA":238713, "CTCAT":270020, "CTCAC":229469, "CTCAG":401930, "CTCTA":153405, "CTCTT":362109, "CTCTC":366343, "CTCTG":407525, "CTCCA":435522, "CTCCT":404222, "CTCCC":361742, "CTCCG":103310, "CTCGA":226527, "CTCGT":81564, "CTCGC":101608, "CTCGG":110942, "CTGAA":340709, "CTGAT":444100, "CTGAC":235121, "CTGAG":401345, "CTGTA":196946, "CTGTT":244856, "CTGTC":271369, "CTGTG":342231, "CTGCA":380658, "CTGCT":364760, "CTGCC":347061, "CTGCG":109722, "CTGGA":449904, "CTGGT":249200, "CTGGC":276903, "CTGGG":427501, "CCAAA":290564, "CCAAT":200841, "CCAAC":207452, "CCAAG":250094, "CCATA":150143, "CCATT":227419, "CCATC":260197, "CCATG":360433, "CCACA":266456, "CCACT":265299, "CCACC":299414, "CCACG":191209, "CCAGA":316218, "CCAGT":302451, "CCAGC":307480, "CCAGG":482582, "CCTAA":132586, "CCTAT":103010, "CCTAC":119581, "CCTAG":137800, "CCTTA":122788, "CCTTT":288489, "CCTTC":329618, "CCTTG":242551, "CCTCA":306376, "CCTCT":394739, "CCTCC":362353, "CCTCG":142180, "CCTGA":331231, "CCTGT":267218, "CCTGC":386038, "CCTGG":481680, "CCCAA":218943, "CCCAT":241411, "CCCAC":301300, "CCCAG":428343, "CCCTA":114202, "CCCTT":264334, "CCCTC":304683, "CCCTG":434438, "CCCCA":352018, "CCCCT":301972, "CCCCC":281793, "CCCCG":192921, "CCCGA":128157, "CCCGT":93889, "CCCGC":142998, "CCCGG":187084, "CCGAA":68908, "CCGAT":62427, "CCGAC":89361, "CCGAG":111366, "CCGTA":38310, "CCGTT":48799, "CCGTC":107671, "CCGTG":93208, "CCGCA":86843, "CCGCT":103048, "CCGCC":139741, "CCGCG":82821, "CCGGA":90107, "CCGGT":85750, "CCGGC":124493, "CCGGG":188158, "CGAAA":61851, "CGAAT":53232, "CGAAC":63435, "CGAAG":98074, "CGATA":30385, "CGATT":54649, "CGATC":71269, "CGATG":91010, "CGACA":75596, "CGACT":121351, "CGACC":117981, "CGACG":70563, "CGAGA":183295, "CGAGT":102720, "CGAGC":94172, "CGAGG":143276, "CGTAA":49250, "CGTAT":40342, "CGTAC":33160, "CGTAG":37942, "CGTTA":31740, "CGTTT":78659, "CGTTC":59286, "CGTTG":45923, "CGTCA":79855, "CGTCT":104102, "CGTCC":73420, "CGTCG":71057, "CGTGA":256502, "CGTGT":110780, "CGTGC":91312, "CGTGG":190407, "CGCAA":65217, "CGCAT":66793, "CGCAC":89496, "CGCAG":108144, "CGCTA":40047, "CGCTT":75093, "CGCTC":108619, "CGCTG":101134, "CGCCA":102279, "CGCCT":98559, "CGCCC":123368, "CGCCG":110214, "CGCGA":85771, "CGCGT":46155, "CGCGC":103067, "CGCGG":83851, "CGGAA":89602, "CGGAT":45259, "CGGAC":72528, "CGGAG":104452, "CGGTA":31466, "CGGTT":53750, "CGGTC":85395, "CGGTG":82835, "CGGCA":97515, "CGGCT":83807, "CGGCC":117048, "CGGCG":112448, "CGGGA":148061, "CGGGT":93755, "CGGGC":119933, "CGGGG":196813, "GAAAA":461473, "GAAAT":326983, "GAAAC":232270, "GAAAG":352343, "GAATA":195716, "GAATT":239098, "GAATC":206840, "GAATG":252798, "GAACA":246511, "GAACT":233019, "GAACC":198074, "GAACG":58814, "GAAGA":351717, "GAAGT":222941, "GAAGC":265136, "GAAGG":336764, "GATAA":157824, "GATAT":149895, "GATAC":107905, "GATAG":122243, "GATTA":130041, "GATTT":248805, "GATTC":204934, "GATTG":155443, "GATCA":609284, "GATCT":198160, "GATCC":162240, "GATCG":73315, "GATGA":292532, "GATGT":180125, "GATGC":212757, "GATGG":262256, "GACAA":182600, "GACAT":190466, "GACAC":200952, "GACAG":275028, "GACTA":111853, "GACTT":219361, "GACTC":259539, "GACTG":344247, "GACCA":183559, "GACCT":215076, "GACCC":218544, "GACCG":84523, "GACGA":78264, "GACGT":71254, "GACGC":71934, "GACGG":109713, "GAGAA":413144, "GAGAT":266212, "GAGAC":234357, "GAGAG":372043, "GAGTA":136701, "GAGTT":251219, "GAGTC":257968, "GAGTG":236855, "GAGCA":263009, "GAGCT":247131, "GAGCC":280904, "GAGCG":109452, "GAGGA":318837, "GAGGT":251788, "GAGGC":337735, "GAGGG":310458, "GTAAA":180378, "GTAAT":127221, "GTAAC":95134, "GTAAG":110011, "GTATA":124837, "GTATT":180227, "GTATC":106496, "GTATG":140270, "GTACA":128816, "GTACT":120330, "GTACC":84286, "GTACG":33112, "GTAGA":108641, "GTAGT":94871, "GTAGC":111754, "GTAGG":121519, "GTTAA":131384, "GTTAT":119119, "GTTAC":94752, "GTTAG":100810, "GTTTA":152505, "GTTTT":312761, "GTTTC":229794, "GTTTG":212332, "GTTCA":228754, "GTTCT":212778, "GTTCC":227075, "GTTCG":63724, "GTTGA":177737, "GTTGT":157014, "GTTGC":166015, "GTTGG":203939, "GTCAA":172314, "GTCAT":211099, "GTCAC":238634, "GTCAG":234444, "GTCTA":106874, "GTCTT":220431, "GTCTC":231900, "GTCTG":251466, "GTCCA":279770, "GTCCT":183057, "GTCCC":216297, "GTCCG":74116, "GTCGA":77402, "GTCGT":91110, "GTCGC":128069, "GTCGG":89903, "GTGAA":266415, "GTGAT":334144, "GTGAC":237906, "GTGAG":230853, "GTGTA":131729, "GTGTT":223280, "GTGTC":200183, "GTGTG":285205, "GTGCA":285804, "GTGCT":196754, "GTGCC":183182, "GTGCG":89420, "GTGGA":241534, "GTGGT":208558, "GTGGC":273460, "GTGGG":304719, "GCAAA":251170, "GCAAT":191745, "GCAAC":165120, "GCAAG":219309, "GCATA":127995, "GCATT":211237, "GCATC":209473, "GCATG":316962, "GCACA":235681, "GCACT":251354, "GCACC":179205, "GCACG":92362, "GCAGA":292364, "GCAGT":227737, "GCAGC":294872, "GCAGG":387171, "GCTAA":120079, "GCTAT":138588, "GCTAC":112464, "GCTAG":84333, "GCTTA":115615, "GCTTT":263685, "GCTTC":264433, "GCTTG":194251, "GCTCA":303347, "GCTCT":240456, "GCTCC":259617, "GCTCG":94586, "GCTGA":307447, "GCTGT":222656, "GCTGC":298701, "GCTGG":308416, "GCCAA":207399, "GCCAT":223859, "GCCAC":273266, "GCCAG":277583, "GCCTA":109516, "GCCTT":205818, "GCCTC":337382, "GCCTG":378613, "GCCCA":237283, "GCCCT":232258, "GCCCC":259892, "GCCCG":119821, "GCCGA":70661, "GCCGT":78278, "GCCGC":133525, "GCCGG":124102, "GCGAA":60969, "GCGAT":71422, "GCGAC":128532, "GCGAG":102461, "GCGTA":27559, "GCGTT":56095, "GCGTC":71444, "GCGTG":91294, "GCGCA":70273, "GCGCT":92670, "GCGCC":122200, "GCGCG":104270, "GCGGA":70255, "GCGGT":66975, "GCGGC":135710, "GCGGG":147088, "GGAAA":439946, "GGAAT":261496, "GGAAC":227301, "GGAAG":377043, "GGATA":112256, "GGATT":205822, "GGATC":160902, "GGATG":232666, "GGACA":272066, "GGACT":246058, "GGACC":164328, "GGACG":75516, "GGAGA":442561, "GGAGT":248363, "GGAGC":260769, "GGAGG":367783, "GGTAA":118553, "GGTAT":109923, "GGTAC":84435, "GGTAG":114703, "GGTTA":96644, "GGTTT":224954, "GGTTC":198010, "GGTTG":200040, "GGTCA":215703, "GGTCT":203694, "GGTCC":163375, "GGTCG":118636, "GGTGA":211048, "GGTGT":184469, "GGTGC":176381, "GGTGG":303368, "GGCAA":254811, "GGCAT":195313, "GGCAC":185111, "GGCAG":350571, "GGCTA":128004, "GGCTT":255327, "GGCTC":281658, "GGCTG":342891, "GGCCA":240964, "GGCCT":274065, "GGCCC":220666, "GGCCG":116924, "GGCGA":102865, "GGCGT":71253, "GGCGC":123157, "GGCGG":145140, "GGGAA":381657, "GGGAT":237182, "GGGAC":218924, "GGGAG":368391, "GGGTA":104719, "GGGTT":252087, "GGGTC":216187, "GGGTG":247283, "GGGCA":231837, "GGGCT":274975, "GGGCC":220348, "GGGCG":127285, "GGGGA":352774, "GGGGT":242099, "GGGGC":262782, "GGGGG":262670 }, "overrepresented_sequences": { } }, "command": "fastp --thread 8 --low_complexity_filter XXXX YYYYY quality --merge --include_unmerged --in1 NC_08_S26_R1.fastq --in2 NC_08_S26_R2.fastq --merged_out ../NC_08_S26.fastq -h NC_08_S26.html -j NC_08_S26.json " }