name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	43515	532385	575900	0.54330
Bos mutus	72004	S	12048	39905	51953	0.04901
Bos gaurus x Bos taurus	1705790	S	1963	96107	98070	0.09252
Bos indicus x Bos taurus	30522	S	1101	34633	35734	0.03371
Bos indicus	9915	S	527	27613	28140	0.02655
Bos frontalis	30520	S	7	128	135	0.00013
Bos grunniens	30521	S	6	461	467	0.00044
Bubalus carabanensis	346063	S	1323	9651	10974	0.01035
Bubalus bubalis	89462	S	1313	9493	10806	0.01019
Bison bison	9901	S	898	10063	10961	0.01034
Bison bonasus	9902	S	7	53	60	0.00006
Tragelaphus scriptus	66440	S	32	73	105	0.00010
Ovis canadensis	37174	S	1605	1599	3204	0.00302
Ovis aries	9940	S	464	1620	2084	0.00197
Capra hircus	9925	S	68	309	377	0.00036
Budorcas taxicolor	37181	S	13	66	79	0.00007
Oryx dammah	59534	S	148	488	636	0.00060
Rangifer tarandus	9870	S	5904	18152	24056	0.02269
Odocoileus virginianus	9874	S	107	1180	1287	0.00121
Cervus elaphus	9860	S	3426	15153	18579	0.01753
Cervus canadensis	1574408	S	23	1096	1119	0.00106
Moschus berezovskii	68408	S	270	569	839	0.00079
Orcinus orca	9733	S	5	51	56	0.00005
Delphinapterus leucas	9749	S	5	114	119	0.00011
Balaenoptera acutorostrata	9767	S	5	36	41	0.00004
Sus scrofa	9823	S	87	28	115	0.00011
Canis lupus	9612	S	342	65	407	0.00038
Homo sapiens	9606	S	6665	105323	111988	0.10565
Pan troglodytes	9598	S	12	87	99	0.00009
Gallus gallus	9031	S	126	44	170	0.00016
Meleagris gallopavo	9103	S	5	0	5	0.00000
Penaeus vannamei	6689	S	12	54	66	0.00006
Malassezia restricta	76775	S	87	95	182	0.00017
Malassezia globosa	76773	S	11	6	17	0.00002
Malassezia arunalokei	1514897	S	9	4	13	0.00001
Aureobasidium pullulans	5580	S	8	0	8	0.00001
Kluyveromyces marxianus	4911	S	6	1	7	0.00001
Triticum aestivum	4565	S	10	24	34	0.00003
Arabidopsis thaliana	3702	S	5	2	7	0.00001
Solanum lycopersicum	4081	S	6	1	7	0.00001
Babesia ovata	189622	S	11	2	13	0.00001
Naegleria fowleri	5763	S	7	0	7	0.00001
Geobacillus stearothermophilus	1422	S	1214	12003	13217	0.01247
[Bacillus] caldolyticus	1394	S	37	1198	1235	0.00117
Geobacillus thermoleovorans	33941	S	22	551	573	0.00054
Geobacillus lituanicus	169283	S	16	329	345	0.00033
Geobacillus thermocatenulatus	33938	S	15	31	46	0.00004
Geobacillus kaustophilus	1462	S	5	142	147	0.00014
Geobacillus sp. JS12	1813182	S	15	113	128	0.00012
Geobacillus sp. E263	391290	S	10	64	74	0.00007
Geobacillus sp. Y412MC52	550542	S	7	101	108	0.00010
Geobacillus sp. 46C-IIa	1963025	S	6	4	10	0.00001
Geobacillus thermodenitrificans	33940	S	37	487	524	0.00049
Geobacillus genomosp. 3	1921421	S	17	8	25	0.00002
Geobacillus subterraneus	129338	S	11	13	24	0.00002
Geobacillus zalihae	213419	S	7	137	144	0.00014
Anoxybacillus flavithermus	33934	S	5714	8316	14030	0.01324
Anoxybacillus ayderensis	265546	S	19	65	84	0.00008
Anoxybacillus gonensis	198467	S	12	53	65	0.00006
Anoxybacillus amylolyticus	294699	S	6	1	7	0.00001
Neobacillus thermocopriae	1215031	S	186	450	636	0.00060
Bacillus methanolicus	1471	S	29	9	38	0.00004
Parageobacillus toebii	153151	S	14	159	173	0.00016
Parageobacillus thermoglucosidasius	1426	S	5	2	7	0.00001
Parageobacillus caldoxylosilyticus	81408	S	5	41	46	0.00004
Staphylococcus epidermidis	1282	S	142	375	517	0.00049
Staphylococcus capitis	29388	S	32	68	100	0.00009
Staphylococcus hominis	1290	S	8	11	19	0.00002
Staphylococcus pasteuri	45972	S	7	8	15	0.00001
Streptococcus thermophilus	1308	S	237	233	470	0.00044
Streptococcus uberis	1349	S	50	62	112	0.00011
Streptococcus dysgalactiae	1334	S	32	90	122	0.00012
Streptococcus oralis	1303	S	8	11	19	0.00002
Streptococcus infantarius	102684	S	7	46	53	0.00005
Streptococcus sanguinis	1305	S	5	2	7	0.00001
Lactococcus lactis	1358	S	66	696	762	0.00072
Lactococcus raffinolactis	1366	S	9	4	13	0.00001
Lentilactobacillus parabuchneri	152331	S	5	6	11	0.00001
Enterococcus avium	33945	S	6	5	11	0.00001
Cutibacterium acnes	1747	S	645	1607	2252	0.00212
Cutibacterium granulosum	33011	S	19	5	24	0.00002
Rothia dentocariosa	2047	S	135	48	183	0.00017
Janibacter indicus	857417	S	6	29	35	0.00003
Corynebacterium tuberculostearicum	38304	S	29	38	67	0.00006
Corynebacterium matruchotii	43768	S	20	4	24	0.00002
Corynebacterium falsenii	108486	S	20	13	33	0.00003
Corynebacterium xerosis	1725	S	17	17	34	0.00003
Corynebacterium casei	160386	S	5	10	15	0.00001
Corynebacterium accolens	38284	S	5	21	26	0.00002
Mycolicibacterium hassiacum	46351	S	12	15	27	0.00003
Dietzia timorensis	499555	S	14	7	21	0.00002
Actinomyces sp. oral taxon 171	706438	S	5	19	24	0.00002
Trueperella pyogenes	1661	S	14	15	29	0.00003
Bifidobacterium pseudolongum	1694	S	18	7	25	0.00002
Thermus thermophilus	274	S	16	12	28	0.00003
Thermus parvatiensis	456163	S	9	32	41	0.00004
Burkholderia cenocepacia	95486	S	454	9193	9647	0.00910
Burkholderia contaminans	488447	S	75	1077	1152	0.00109
Burkholderia cepacia	292	S	36	136	172	0.00016
Burkholderia sp. EMB26	2854261	S	18	984	1002	0.00095
Ralstonia insidiosa	190721	S	12	10	22	0.00002
Serratia marcescens	615	S	174	4056	4230	0.00399
Pseudomonas sp. MYb193	1827300	S	66	645	711	0.00067
Pseudomonas sp. SDM007	2812000	S	22	128	150	0.00014
Pseudomonas sp. J380	2605424	S	15	194	209	0.00020
Pseudomonas sp. DTU12.1	2654238	S	11	264	275	0.00026
Pseudomonas sp. LG1D9	2083054	S	7	158	165	0.00016
Pseudomonas sp. FDAARGOS_380	2018067	S	6	72	78	0.00007
Pseudomonas sp. NIBR-H-19	2901380	S	6	10	16	0.00002
Pseudomonas lundensis	86185	S	122	86	208	0.00020
Pseudomonas proteolytica	219574	S	9	84	93	0.00009
Pseudomonas rhodesiae	76760	S	8	17	25	0.00002
Pseudomonas fluorescens	294	S	6	64	70	0.00007
Pseudomonas lurida	244566	S	7	190	197	0.00019
Pseudomonas psychrophila	122355	S	6	6	12	0.00001
Pseudomonas luteola	47886	S	5	21	26	0.00002
Stutzerimonas stutzeri	316	S	9	22	31	0.00003
Acinetobacter sp. TTH0-4	1646498	S	154	245	399	0.00038
Acinetobacter johnsonii	40214	S	5	38	43	0.00004
Moraxella osloensis	34062	S	10	5	15	0.00001
Psychrobacter sanguinis	861445	S	6	2	8	0.00001
Xanthomonas campestris	339	S	5	18	23	0.00002
Haemophilus parainfluenzae	729	S	7	5	12	0.00001
Bradyrhizobium sp. PSBB068	2715960	S	7	32	39	0.00004
Paracoccus yeei	147645	S	30	57	87	0.00008
bacterium	1869227	S	295	2514	2809	0.00265
Myoviridae sp. ctu2j3	2825197	S	3082	0	3082	0.00291
Caudoviricetes sp.	2832643	S	559	635	1194	0.00113
Geobacillus virus E3	1572712	S	18	0	18	0.00002
uncultured organism	155900	S	313	7582	7895	0.00745
unidentified	32644	S	8	78	86	0.00008