name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	132797	1769403	1902200	0.60565
Bos mutus	72004	S	38954	139269	178223	0.05675
Bos gaurus x Bos taurus	1705790	S	5495	290622	296117	0.09428
Bos indicus x Bos taurus	30522	S	3510	119355	122865	0.03912
Bos indicus	9915	S	1572	89462	91034	0.02898
Bos grunniens	30521	S	22	1817	1839	0.00059
Bos frontalis	30520	S	7	156	163	0.00005
Bubalus carabanensis	346063	S	4238	34352	38590	0.01229
Bubalus bubalis	89462	S	4172	33303	37475	0.01193
Bison bison	9901	S	2637	31845	34482	0.01098
Bison bonasus	9902	S	7	61	68	0.00002
Tragelaphus scriptus	66440	S	68	175	243	0.00008
Tragelaphus oryx	9945	S	7	9	16	0.00001
Ovis canadensis	37174	S	5508	6866	12374	0.00394
Ovis aries	9940	S	1218	4891	6109	0.00195
Capra hircus	9925	S	215	1121	1336	0.00043
Budorcas taxicolor	37181	S	30	172	202	0.00006
Oryx dammah	59534	S	494	1836	2330	0.00074
Rangifer tarandus	9870	S	20069	61452	81521	0.02596
Odocoileus virginianus	9874	S	351	3979	4330	0.00138
Capreolus capreolus	9858	S	6	44	50	0.00002
Cervus elaphus	9860	S	11853	52415	64268	0.02046
Cervus canadensis	1574408	S	77	3717	3794	0.00121
Moschus berezovskii	68408	S	745	1753	2498	0.00080
Orcinus orca	9733	S	18	320	338	0.00011
Physeter catodon	9755	S	6	108	114	0.00004
Balaenoptera acutorostrata	9767	S	14	183	197	0.00006
Sus scrofa	9823	S	225	100	325	0.00010
Canis lupus	9612	S	200	78	278	0.00009
Lutra lutra	9657	S	6	18	24	0.00001
Felis catus	9685	S	5	17	22	0.00001
Equus asinus	9793	S	5	11	16	0.00001
Homo sapiens	9606	S	238	13116	13354	0.00425
Heterocephalus glaber	10181	S	6	13	19	0.00001
Kluyveromyces marxianus	4911	S	16	5	21	0.00001
Trichoderma atroviride	63577	S	5	2	7	0.00000
Babesia ovata	189622	S	13	1	14	0.00000
Geobacillus stearothermophilus	1422	S	3065	35102	38167	0.01215
[Bacillus] caldolyticus	1394	S	95	3381	3476	0.00111
Geobacillus lituanicus	169283	S	56	1287	1343	0.00043
Geobacillus thermoleovorans	33941	S	47	1357	1404	0.00045
Geobacillus thermocatenulatus	33938	S	30	91	121	0.00004
Geobacillus kaustophilus	1462	S	13	421	434	0.00014
Geobacillus sp. E263	391290	S	51	328	379	0.00012
Geobacillus sp. JS12	1813182	S	47	389	436	0.00014
Geobacillus sp. Y412MC52	550542	S	17	260	277	0.00009
Geobacillus sp. CX412	2973804	S	11	125	136	0.00004
Geobacillus sp. 46C-IIa	1963025	S	11	9	20	0.00001
Geobacillus sp. LC300	1519377	S	9	194	203	0.00006
Geobacillus sp. GHH01	1233873	S	8	252	260	0.00008
Geobacillus thermodenitrificans	33940	S	95	1653	1748	0.00056
Geobacillus zalihae	213419	S	52	1111	1163	0.00037
Geobacillus genomosp. 3	1921421	S	50	32	82	0.00003
Geobacillus subterraneus	129338	S	48	71	119	0.00004
Anoxybacillus flavithermus	33934	S	18529	43168	61697	0.01964
Anoxybacillus ayderensis	265546	S	62	227	289	0.00009
Anoxybacillus gonensis	198467	S	35	226	261	0.00008
Anoxybacillus amylolyticus	294699	S	27	12	39	0.00001
Neobacillus thermocopriae	1215031	S	709	2032	2741	0.00087
Bacillus methanolicus	1471	S	98	45	143	0.00005
Bacillus glycinifermentans	1664069	S	7	2	9	0.00000
Bacillus subtilis	1423	S	5	143	148	0.00005
Parageobacillus toebii	153151	S	22	325	347	0.00011
Parageobacillus caldoxylosilyticus	81408	S	21	181	202	0.00006
Parageobacillus thermoglucosidasius	1426	S	12	11	23	0.00001
Aeribacillus pallidus	33936	S	13	69	82	0.00003
Staphylococcus chromogenes	46126	S	8	102	110	0.00004
Streptococcus thermophilus	1308	S	993	2059	3052	0.00097
Streptococcus uberis	1349	S	216	814	1030	0.00033
Streptococcus dysgalactiae	1334	S	108	537	645	0.00021
Streptococcus ruminantium	1917441	S	10	54	64	0.00002
Streptococcus agalactiae	1311	S	6	115	121	0.00004
Lactococcus lactis	1358	S	116	2264	2380	0.00076
Lactococcus raffinolactis	1366	S	15	12	27	0.00001
Enterococcus saccharolyticus	41997	S	6	8	14	0.00000
Jeotgalibaca porci	1868793	S	8	4	12	0.00000
Corynebacterium falsenii	108486	S	99	100	199	0.00006
Corynebacterium xerosis	1725	S	36	65	101	0.00003
Corynebacterium efficiens	152794	S	10	4	14	0.00000
Corynebacterium camporealensis	161896	S	10	4	14	0.00000
Corynebacterium casei	160386	S	9	25	34	0.00001
Corynebacterium stationis	1705	S	5	4	9	0.00000
Rothia kristinae	37923	S	7	32	39	0.00001
Brachybacterium sp. Z12	2759167	S	5	12	17	0.00001
Bifidobacterium pseudolongum	1694	S	28	15	43	0.00001
Cutibacterium acnes	1747	S	8	22	30	0.00001
Propioniciclava sp. MC1595	2760308	S	6	6	12	0.00000
Trueperella pyogenes	1661	S	13	10	23	0.00001
Streptomyces sp. ICC1	2099583	S	5	28	33	0.00001
Thermus thermophilus	274	S	67	73	140	0.00004
Thermus parvatiensis	456163	S	10	52	62	0.00002
Mycoplasmopsis bovis	28903	S	6	0	6	0.00000
Burkholderia cenocepacia	95486	S	300	6868	7168	0.00228
Burkholderia contaminans	488447	S	52	854	906	0.00029
Burkholderia cepacia	292	S	25	110	135	0.00004
Burkholderia lata	482957	S	6	24	30	0.00001
Burkholderia sp. EMB26	2854261	S	6	377	383	0.00012
Ralstonia insidiosa	190721	S	5	6	11	0.00000
Pseudomonas sp. MYb193	1827300	S	144	1491	1635	0.00052
Pseudomonas sp. SDM007	2812000	S	54	324	378	0.00012
Pseudomonas sp. FDAARGOS_380	2018067	S	21	254	275	0.00009
Pseudomonas sp. NIBR-H-19	2901380	S	20	37	57	0.00002
Pseudomonas sp. J380	2605424	S	19	261	280	0.00009
Pseudomonas sp. DTU12.1	2654238	S	17	452	469	0.00015
Pseudomonas sp. LG1D9	2083054	S	13	326	339	0.00011
Pseudomonas sp. So3.2b	2864101	S	6	331	337	0.00011
Pseudomonas sp. SW-3	147212	S	5	276	281	0.00009
Pseudomonas lundensis	86185	S	306	280	586	0.00019
Pseudomonas fragi	296	S	27	213	240	0.00008
Pseudomonas protegens	380021	S	6	121	127	0.00004
Pseudomonas rhodesiae	76760	S	23	53	76	0.00002
Pseudomonas proteolytica	219574	S	11	100	111	0.00004
Pseudomonas azotoformans	47878	S	9	120	129	0.00004
Pseudomonas fluorescens	294	S	7	75	82	0.00003
Pseudomonas brenneri	129817	S	7	20	27	0.00001
Pseudomonas lurida	244566	S	13	343	356	0.00011
Pseudomonas psychrophila	122355	S	12	18	30	0.00001
Pseudomonas simiae	321846	S	8	22	30	0.00001
Acinetobacter sp. TTH0-4	1646498	S	455	803	1258	0.00040
Acinetobacter johnsonii	40214	S	18	176	194	0.00006
Acinetobacter baumannii	470	S	10	260	270	0.00009
Moraxella osloensis	34062	S	7	6	13	0.00000
Methylocaldum marinum	1432792	S	8	0	8	0.00000
Coxiella burnetii	777	S	5	0	5	0.00000
Cellvibrio sp. KY-GH-1	2303332	S	5	0	5	0.00000
Bradyrhizobium sp. PSBB068	2715960	S	5	10	15	0.00000
Caulobacter sp. FWC26	69665	S	7	3	10	0.00000
Asticcacaulis excentricus	78587	S	5	1	6	0.00000
Paracoccus alcaliphilus	34002	S	7	10	17	0.00001
Myoviridae sp. ctu2j3	2825197	S	1975	0	1975	0.00063
Caudoviricetes sp.	2832643	S	340	1374	1714	0.00055
Geobacillus virus E3	1572712	S	104	11	115	0.00004
uncultured organism	155900	S	1145	98629	99774	0.03177