name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	20511	262069	282580	0.30352
Bos mutus	72004	S	6124	20231	26355	0.02831
Bos gaurus x Bos taurus	1705790	S	961	48872	49833	0.05353
Bos indicus x Bos taurus	30522	S	567	17734	18301	0.01966
Bos indicus	9915	S	235	12354	12589	0.01352
Bubalus bubalis	89462	S	697	5056	5753	0.00618
Bubalus carabanensis	346063	S	647	4893	5540	0.00595
Bison bison	9901	S	437	4795	5232	0.00562
Tragelaphus scriptus	66440	S	12	38	50	0.00005
Ovis canadensis	37174	S	879	958	1837	0.00197
Ovis aries	9940	S	196	725	921	0.00099
Capra hircus	9925	S	43	202	245	0.00026
Oryx dammah	59534	S	61	223	284	0.00031
Rangifer tarandus	9870	S	3432	9642	13074	0.01404
Odocoileus virginianus	9874	S	45	467	512	0.00055
Cervus elaphus	9860	S	2137	8671	10808	0.01161
Cervus canadensis	1574408	S	11	492	503	0.00054
Moschus berezovskii	68408	S	141	300	441	0.00047
Sus scrofa	9823	S	50	21	71	0.00008
Canis lupus	9612	S	44	13	57	0.00006
Homo sapiens	9606	S	83	2000	2083	0.00224
Eilema depressum	987419	S	6	277	283	0.00030
Chymomyza fuscimana	1692350	S	29	504	533	0.00057
Pinctada fucata	50426	S	6	46	52	0.00006
Epichloe typhina	5113	S	11	123	134	0.00014
uncultured fungus	175245	S	21	1074	1095	0.00118
Lolium perenne	4522	S	35	58	93	0.00010
Avena sativa	4498	S	98	375	473	0.00051
Agrostis stolonifera	63632	S	26	1121	1147	0.00123
Hordeum vulgare	4513	S	5	18	23	0.00002
Brachypodium distachyon	15368	S	8	24	32	0.00003
Achillea schmakovii	282765	S	5	130	135	0.00015
Rhododendron vialii	182163	S	17	20	37	0.00004
Babesia ovata	189622	S	5	1	6	0.00001
Bradyrhizobium sp. PSBB068	2715960	S	737	20046	20783	0.02232
Bradyrhizobium sp. 170	2782641	S	47	670	717	0.00077
Bradyrhizobium sp. CB82	3039159	S	25	275	300	0.00032
Bradyrhizobium sp. 186	2782654	S	22	312	334	0.00036
Bradyrhizobium sp. 200	2782665	S	20	261	281	0.00030
Bradyrhizobium sp. CCBAU 051011	858422	S	12	153	165	0.00018
Bradyrhizobium sp. S12-14-2	3056648	S	10	144	154	0.00017
Bradyrhizobium sp. NP1	3049772	S	9	140	149	0.00016
Bradyrhizobium sp. CB1015	2976822	S	6	149	155	0.00017
Bradyrhizobium genosp. L	83637	S	6	112	118	0.00013
Bradyrhizobium erythrophlei	1437360	S	266	2100	2366	0.00254
Bradyrhizobium sediminis	2840469	S	138	2521	2659	0.00286
Bradyrhizobium ottawaense	931866	S	39	6669	6708	0.00721
Bradyrhizobium lablabi	722472	S	29	1474	1503	0.00161
Bradyrhizobium canariense	255045	S	23	950	973	0.00105
Bradyrhizobium oligotrophicum	44255	S	12	220	232	0.00025
Bradyrhizobium paxllaeri	190148	S	12	177	189	0.00020
Bradyrhizobium japonicum	375	S	11	895	906	0.00097
Bradyrhizobium betae	244734	S	11	2089	2100	0.00226
Bradyrhizobium icense	1274631	S	8	115	123	0.00013
Bradyrhizobium barranii	2992140	S	5	606	611	0.00066
Afipia sp. GAS231	1882747	S	20	895	915	0.00098
Afipia sp.	1871052	S	17	1092	1109	0.00119
Nitrobacter hamburgensis	912	S	29	430	459	0.00049
Rhodopseudomonas palustris	1076	S	5	165	170	0.00018
Mesorhizobium sp. AR07	2865838	S	6	504	510	0.00055
Rhodoplanes sp. Z2-YC6860	674703	S	80	1033	1113	0.00120
Hyphomicrobium sp. DMF-1	3019544	S	9	93	102	0.00011
Hyphomicrobium sp. ghe19	2682968	S	6	38	44	0.00005
Pseudolabrys taiwanensis	331696	S	34	716	750	0.00081
Pseudolabrys sp. FHR47	2562284	S	13	308	321	0.00034
Enhydrobacter sp.	1894999	S	58	2574	2632	0.00283
Pseudorhodoplanes sinuspersici	1235591	S	7	58	65	0.00007
Beijerinckiaceae bacterium	1978229	S	5	9	14	0.00002
Methylocapsa sp. D3K7	3041435	S	5	71	76	0.00008
Methylovirgula sp. HY1	2822761	S	5	21	26	0.00003
Blastochloris tepida	2233851	S	5	233	238	0.00026
Acidibrevibacterium fodinaquatile	1969806	S	21	1221	1242	0.00133
Hypericibacter terrae	2602015	S	5	181	186	0.00020
Rhodospirillales bacterium	2026786	S	5	154	159	0.00017
Brevundimonas sp.	1871086	S	5	241	246	0.00026
Burkholderia cenocepacia	95486	S	34	11673	11707	0.01257
Burkholderia contaminans	488447	S	5	2741	2746	0.00295
Massilia antarctica	2765360	S	8	289	297	0.00032
Herminiimonas arsenicoxydans	204773	S	47	22846	22893	0.02459
Collimonas fungivorans	158899	S	6	89	95	0.00010
Collimonas pratensis	279113	S	6	69	75	0.00008
Glaciimonas sp. PAMC28666	2807626	S	7	18	25	0.00003
Polaromonas sp. JS666	296591	S	16	270	286	0.00031
Polaromonas sp. P1-6	2895564	S	13	209	222	0.00024
Polaromonas sp. P2-4	2895563	S	9	166	175	0.00019
Variovorax sp. SRS16	282217	S	7	778	785	0.00084
Variovorax sp. HW608	1034889	S	6	199	205	0.00022
Variovorax paradoxus	34073	S	8	679	687	0.00074
Rhodoferax ferrireducens	192843	S	10	37	47	0.00005
Rhodoferax sp. BAB1	2741720	S	7	298	305	0.00033
Rhodoferax sediminis	2509614	S	6	132	138	0.00015
Ramlibacter tataouinensis	94132	S	6	342	348	0.00037
Piscinibacter sp. XHJ-5	3037797	S	31	1006	1037	0.00111
Rhizobacter sp. AJA081-3	2753607	S	14	1041	1055	0.00113
Burkholderiales bacterium	1891238	S	20	721	741	0.00080
Nitrosospira briensis	35799	S	26	108	134	0.00014
Nitrosospira sp. NRS527	155925	S	14	47	61	0.00007
uncultured Nitrosomonadaceae bacterium	207829	S	6	8877	8883	0.00954
Ferrigenium kumadai	1682490	S	12	298	310	0.00033
Sulfuriferula plumbiphila	171865	S	8	215	223	0.00024
Sulfuricella denitrificans	649841	S	6	38	44	0.00005
Rugosibacter aromaticivorans	1565605	S	8	663	671	0.00072
Usitatibacter palustris	2732487	S	7	102	109	0.00012
Aromatoleum aromaticum	551760	S	5	454	459	0.00049
Betaproteobacteria bacterium	1891241	S	15	58	73	0.00008
Betaproteobacteria bacterium GR16-43	1904640	S	9	171	180	0.00019
Candidatus Accumulibacter similis	2954388	S	8	546	554	0.00060
uncultured beta proteobacterium	86027	S	5	8241	8246	0.00886
Pseudomonas sp. MYb193	1827300	S	9	447	456	0.00049
Pseudomonas sp. SDM007	2812000	S	7	281	288	0.00031
Pseudomonas lundensis	86185	S	27	440	467	0.00050
Pseudomonas fluorescens	294	S	8	678	686	0.00074
Pseudomonas rhodesiae	76760	S	7	678	685	0.00074
uncultured Xanthomonas sp.	152831	S	12	2665	2677	0.00288
Acinetobacter sp. TTH0-4	1646498	S	44	1947	1991	0.00214
Acinetobacter johnsonii	40214	S	5	286	291	0.00031
Psychrobacter sp. WB2	3043330	S	32	42	74	0.00008
Sulfuricaulis limicola	1620215	S	17	165	182	0.00020
Sulfurifustis variabilis	1675686	S	13	96	109	0.00012
Rheinheimera sp. D18	2545632	S	17	159	176	0.00019
Geobacillus stearothermophilus	1422	S	307	4931	5238	0.00563
Geobacillus sp. JS12	1813182	S	10	108	118	0.00013
Geobacillus sp. Y412MC52	550542	S	5	91	96	0.00010
[Bacillus] caldolyticus	1394	S	10	524	534	0.00057
Geobacillus thermoleovorans	33941	S	6	266	272	0.00029
Geobacillus thermodenitrificans	33940	S	15	332	347	0.00037
Geobacillus genomosp. 3	1921421	S	6	5	11	0.00001
Anoxybacillus flavithermus	33934	S	2001	5981	7982	0.00857
Anoxybacillus sediminis	2613334	S	244	297	541	0.00058
Anoxybacillus caldiproteolyticus	247480	S	6	7	13	0.00001
Bacillus paralicheniformis	1648923	S	68	194	262	0.00028
Bacillus subtilis	1423	S	21	1114	1135	0.00122
Bacillus licheniformis	1402	S	14	939	953	0.00102
Bacillus smithii	1479	S	46	104	150	0.00016
Bacillus glycinifermentans	1664069	S	23	22	45	0.00005
Bacillus methanolicus	1471	S	9	12	21	0.00002
Shouchella clausii	79880	S	361	455	816	0.00088
Neobacillus thermocopriae	1215031	S	63	255	318	0.00034
Peribacillus psychrosaccharolyticus	1407	S	48	97	145	0.00016
Heyndrickxia oleronia	38875	S	21	37	58	0.00006
Heyndrickxia coagulans	1398	S	11	56	67	0.00007
Parageobacillus thermoglucosidasius	1426	S	14	24	38	0.00004
Parageobacillus sp. KH3-4	2916802	S	9	8	17	0.00002
Parageobacillus caldoxylosilyticus	81408	S	5	53	58	0.00006
Lysinibacillus sp. 2017	2169540	S	27	47	74	0.00008
Psychrobacillus sp. INOP01	2829187	S	6	10	16	0.00002
Pradoshia sp. D12	2651284	S	7	6	13	0.00001
Paenibacillus macerans	44252	S	217	271	488	0.00052
Paenibacillus sp. 32O-W	1695218	S	85	39	124	0.00013
Paenibacillus sp. PSB04	2866810	S	23	147	170	0.00018
Paenibacillus sp. SYP-B4298	2996034	S	9	4	13	0.00001
Paenibacillus ihbetae	1870820	S	79	45	124	0.00013
Paenibacillus psychroresistens	1778678	S	71	18	89	0.00010
Paenibacillus woosongensis	307580	S	15	12	27	0.00003
Paenibacillus konkukensis	2020716	S	12	6	18	0.00002
Paenibacillus cellulositrophicus	562959	S	11	62	73	0.00008
Paenibacillus andongensis	2975482	S	10	4	14	0.00002
Paenibacillus naphthalenovorans	162209	S	6	15	21	0.00002
Thermobacillus composti	377615	S	779	438	1217	0.00131
Brevibacillus sp. WF146	319501	S	27	28	55	0.00006
Brevibacillus marinus	2496837	S	14	8	22	0.00002
Brevibacillus composti	2796470	S	8	9	17	0.00002
Brevibacillus agri	51101	S	6	110	116	0.00012
Candidatus Pristimantibacillus lignocellulolyticus	2994561	S	7	2	9	0.00001
Thermoactinomyces vulgaris	2026	S	1356	2036	3392	0.00364
Thermoactinomyces sp. YT06	2507539	S	142	28	170	0.00018
Novibacillus thermophilus	1471761	S	87	43	130	0.00014
Laceyella sacchari	37482	S	74	107	181	0.00019
Sporosarcina sp. Marseille-Q4063	2810514	S	10	60	70	0.00008
Ureibacillus thermosphaericus	51173	S	20	92	112	0.00012
Planococcus sp. 107-1	2908840	S	7	10	17	0.00002
Solibacillus silvestris	76853	S	6	21	27	0.00003
Staphylococcus capitis	29388	S	11	85	96	0.00010
Streptococcus thermophilus	1308	S	26	156	182	0.00020
Streptococcus uberis	1349	S	11	53	64	0.00007
Streptococcus dysgalactiae	1334	S	10	59	69	0.00007
Lactococcus lactis	1358	S	33	1217	1250	0.00134
Clostridium tagluense	360422	S	12	39	51	0.00005
Clostridium estertheticum	238834	S	11	33	44	0.00005
Clostridium gelidum	704125	S	7	19	26	0.00003
Romboutsia hominis	1507512	S	6	67	73	0.00008
Desulfitobacterium metallireducens	142877	S	11	20	31	0.00003
Dehalobacter restrictus	55583	S	8	40	48	0.00005
Symbiobacterium thermophilum	2734	S	12	7	19	0.00002
Anaerocolumna chitinilytica	1727145	S	5	4	9	0.00001
Mycolicibacterium helvum	1534349	S	11	428	439	0.00047
Mycolicibacterium sp. YH-1	2908837	S	8	163	171	0.00018
Mycolicibacterium sarraceniae	1534348	S	6	253	259	0.00028
Rhodococcus globerulus	33008	S	56	163	219	0.00024
Rhodococcus erythropolis	1833	S	22	920	942	0.00101
Rhodococcus qingshengii	334542	S	6	474	480	0.00052
Corynebacterium falsenii	108486	S	16	350	366	0.00039
Corynebacterium stationis	1705	S	7	19	26	0.00003
Corynebacterium xerosis	1725	S	6	100	106	0.00011
Arthrobacter sp. 7749	2020130	S	38	97	135	0.00015
Arthrobacter sp. C2	1546536	S	20	52	72	0.00008
Arthrobacter sp. PAMC25564	2565366	S	19	75	94	0.00010
Arthrobacter alpinus	656366	S	49	128	177	0.00019
Glutamicibacter arilaitensis	256701	S	48	544	592	0.00064
Paeniglutamicibacter sp. Y32M11	2853258	S	29	111	140	0.00015
Pseudarthrobacter psychrotolerans	2697569	S	6	16	22	0.00002
Brachybacterium sp. Z12	2759167	S	10	63	73	0.00008
Brachybacterium vulturis	2017484	S	6	55	61	0.00007
Brachybacterium avium	2017485	S	6	53	59	0.00006
Brevibacterium aurantiacum	273384	S	8	422	430	0.00046
Brevibacteriaceae bacterium ZFBP1038	2909229	S	8	13	21	0.00002
Janibacter limosus	53458	S	30	255	285	0.00031
Thermobispora bispora	2006	S	358	2726	3084	0.00331
Nonomuraea coxensis	404386	S	5	45	50	0.00005
Nonomuraea gerenzanensis	93944	S	5	41	46	0.00005
Streptosporangium sp. 'caverna'	2202249	S	7	50	57	0.00006
Nocardiopsis alba	53437	S	247	4199	4446	0.00478
Thermobifida fusca	2021	S	5	30	35	0.00004
Streptomyces albus	1888	S	40	876	916	0.00098
Streptomyces sp. NHF165	2175864	S	6	43	49	0.00005
Streptomyces deccanensis	424188	S	14	122	136	0.00015
Streptomyces harbinensis	1176198	S	8	194	202	0.00022
Streptomyces atratus	1893	S	7	50	57	0.00006
Streptomyces lunaelactis	1535768	S	5	45	50	0.00005
Streptomyces akebiae	2865673	S	5	38	43	0.00005
Nocardioides sp. dk884	2662361	S	8	194	202	0.00022
Cutibacterium acnes	1747	S	83	1017	1100	0.00118
Saccharopolyspora gregorii	33914	S	13	220	233	0.00025
Micromonospora viridifaciens	1881	S	5	122	127	0.00014
Actinobacteria bacterium IMCC26256	1650658	S	8	5	13	0.00001
Conexibacter woesei	191495	S	8	289	297	0.00032
Capillimicrobium parvum	2884022	S	11	365	376	0.00040
Miltoncostaea marina	2843215	S	6	191	197	0.00021
Miltoncostaea oceani	2843216	S	5	78	83	0.00009
Aquihabitans sp. G128	2849779	S	7	217	224	0.00024
Actinomarinicola tropica	2789776	S	5	139	144	0.00015
Rubrobacter tropicus	2653851	S	57	129	186	0.00020
Ktedonobacteria bacterium brp13	2717365	S	88	51	139	0.00015
Ktedonobacterales bacterium	2306968	S	7	0	7	0.00001
Ktedonosporobacter rubrisoli	2509675	S	5	2	7	0.00001
Tepidiformaceae bacterium	3022862	S	5	6	11	0.00001
uncultured Chloroflexota bacterium	166587	S	5	533	538	0.00058
uncultured Dehalococcoidia bacterium	498747	S	7	3	10	0.00001
Capsulimonas corticalis	2219043	S	5	4	9	0.00001
uncultured bacterium	77133	S	1409	264902	266311	0.28605
uncultured bacterium contig00043	1181530	S	142	2	144	0.00015
uncultured soil bacterium	164851	S	38	6322	6360	0.00683
uncultured bacterium contig00048	1181533	S	29	0	29	0.00003
uncultured bacterium 213	698383	S	12	54	66	0.00007
uncultured bacterium contig00012	1239453	S	11	0	11	0.00001
uncultured bacterium 259	698386	S	10	73	83	0.00009
uncultured bacterium W5-51b	1130999	S	7	19	26	0.00003
uncultured bacterium contig00020	1239454	S	7	0	7	0.00001
uncultured bacterium 888	548896	S	6	0	6	0.00001
uncultured bacterium contig00001	1181493	S	6	2	8	0.00001
uncultured bacterium contig00032	1181521	S	6	0	6	0.00001
uncultured bacterium contig00172	1239500	S	6	0	6	0.00001
uncultured bacterium 70	698392	S	6	27	33	0.00004
uncultured bacterium ctg7180000001094	1425124	S	5	0	5	0.00001
uncultured bacterium 270	698387	S	5	19	24	0.00003
Frigoriglobus tundricola	2774151	S	7	71	78	0.00008
Paludisphaera borealis	1387353	S	19	41	60	0.00006
Singulisphaera acidiphila	466153	S	9	651	660	0.00071
Tautonia plasticadhaerens	2527974	S	6	4	10	0.00001
Opitutus sp. GAS368	1882749	S	50	178	228	0.00024
Opitutus terrae	107709	S	7	23	30	0.00003
Lacunisphaera limnophila	1838286	S	16	68	84	0.00009
Nibricoccus aquaticus	2576891	S	6	11	17	0.00002
Sorangium cellulosum	56	S	26	313	339	0.00036
Minicystis rosea	888845	S	27	88	115	0.00012
Labilithrix luteola	1391654	S	74	155	229	0.00025
Sandaracinus amylolyticus	927083	S	26	69	95	0.00010
Archangium violaceum	83451	S	46	119	165	0.00018
Stigmatella aurantiaca	41	S	14	69	83	0.00009
Anaeromyxobacter oryzae	2918170	S	17	53	70	0.00008
Alloacidobacterium dinghuense	2763107	S	21	125	146	0.00016
Terriglobus albidus	1592106	S	5	31	36	0.00004
Paludibaculum fermentans	1473598	S	13	59	72	0.00008
Luteitalea pratensis	1855912	S	39	33	72	0.00008
Luteitalea sp. TBR-22	2802971	S	12	24	36	0.00004
uncultured Vicinamibacterales bacterium	3036250	S	15	20	35	0.00004
uncultured Acidobacteriota bacterium	171953	S	17	6130	6147	0.00660
Geothrix sp.	1962974	S	7	13	20	0.00002
Holophagales bacterium	2478486	S	6	0	6	0.00001
Acidobacteriota bacterium	1978231	S	13	1	14	0.00002
Nitrospira sp.	70125	S	60	40	100	0.00011
uncultured Nitrospira sp.	157176	S	24	3580	3604	0.00387
Nitrospira tepida	2973512	S	12	11	23	0.00002
Nitrospira defluvii	330214	S	7	9	16	0.00002
Nitrospira moscoviensis	42253	S	5	7	12	0.00001
uncultured Nitrospirae bacterium Rifle_16ft_4_minimus_10340	1665123	S	31	0	31	0.00003
Flavobacterium sp. F-29	2893883	S	11	133	144	0.00015
Chryseolinea soli	2321403	S	40	31	71	0.00008
Sphingobacteriales bacterium Swamp196	3036359	S	7	14	21	0.00002
Gemmatirosa kalamazoonensis	861299	S	18	52	70	0.00008
Gemmatimonadota bacterium	2026742	S	28	56	84	0.00009
Candidatus Moranbacteria bacterium	2045217	S	13	19	32	0.00003
Candidatus Nomurabacteria bacterium	2052152	S	9	6	15	0.00002
Candidatus Daviesbacteria bacterium	2053542	S	5	0	5	0.00001
Candidatus Saccharibacteria bacterium	2026720	S	5	10	15	0.00002
Candidatus Methylomirabilis oxyfera	671143	S	6	3	9	0.00001
Elusimicrobiota bacterium	2030800	S	46	4	50	0.00005
Geobacter sp. FeAm09	2597769	S	5	28	33	0.00004
Deltaproteobacteria bacterium	2026735	S	12	3	15	0.00002
uncultured delta proteobacterium	34034	S	7	1803	1810	0.00194
bacterium	1869227	S	14	1022	1036	0.00111
uncultured Candidatus Entotheonella sp.	312019	S	9	3	12	0.00001
Candidatus Nitrosotalea okcheonensis	1903276	S	47	106	153	0.00016
Candidatus Nitrosotalea devanaterra	1078905	S	19	287	306	0.00033
uncultured archaeon	115547	S	67	19570	19637	0.02109
archaeon	1906665	S	17	194	211	0.00023
Myoviridae sp. ctu2j3	2825197	S	274	0	274	0.00029
Caudoviricetes sp.	2832643	S	52	95	147	0.00016
Rhodoferax phage P26218	1636270	S	32	0	32	0.00003
Geobacillus virus E3	1572712	S	17	0	17	0.00002
uncultured organism	155900	S	224	8051	8275	0.00889
uncultured prokaryote	198431	S	95	1020	1115	0.00120
uncultured organism pCelD	1170209	S	27	0	27	0.00003
unidentified	32644	S	21	305	326	0.00035