name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	29985	388870	418855	0.31774
Bos mutus	72004	S	8801	29296	38097	0.02890
Bos gaurus x Bos taurus	1705790	S	1387	71756	73143	0.05548
Bos indicus x Bos taurus	30522	S	775	24221	24996	0.01896
Bos indicus	9915	S	390	20472	20862	0.01583
Bos grunniens	30521	S	12	982	994	0.00075
Bubalus bubalis	89462	S	986	7151	8137	0.00617
Bubalus carabanensis	346063	S	936	7142	8078	0.00613
Bison bison	9901	S	655	7135	7790	0.00591
Tragelaphus scriptus	66440	S	15	45	60	0.00005
Ovis canadensis	37174	S	1383	1547	2930	0.00222
Ovis aries	9940	S	340	1274	1614	0.00122
Capra hircus	9925	S	69	330	399	0.00030
Budorcas taxicolor	37181	S	12	67	79	0.00006
Oryx dammah	59534	S	102	381	483	0.00037
Rangifer tarandus	9870	S	4968	14403	19371	0.01469
Odocoileus virginianus	9874	S	90	958	1048	0.00079
Cervus elaphus	9860	S	3081	12891	15972	0.01212
Cervus canadensis	1574408	S	13	597	610	0.00046
Moschus berezovskii	68408	S	193	414	607	0.00046
Balaenoptera acutorostrata	9767	S	5	115	120	0.00009
Sus scrofa	9823	S	60	24	84	0.00006
Canis lupus	9612	S	58	25	83	0.00006
Homo sapiens	9606	S	52	1427	1479	0.00112
Cantharis rufa	350087	S	5	890	895	0.00068
Malassezia restricta	76775	S	18	56	74	0.00006
uncultured fungus	175245	S	38	1987	2025	0.00154
Lupinus angustifolius	3871	S	1252	363	1615	0.00123
Lupinus nootkatensis	53234	S	19	2071	2090	0.00159
Chenopodium album	3559	S	11	28	39	0.00003
Deschampsia antarctica	159298	S	5	525	530	0.00040
Lolium perenne	4522	S	50	66	116	0.00009
Lolium rigidum	89674	S	9	14	23	0.00002
Poa pratensis	4545	S	8	357	365	0.00028
Avena sativa	4498	S	187	816	1003	0.00076
Agrostis stolonifera	63632	S	22	1180	1202	0.00091
Hordeum vulgare	4513	S	6	61	67	0.00005
Brachypodium distachyon	15368	S	7	24	31	0.00002
Marchantia polymorpha	3197	S	5	0	5	0.00000
Babesia ovata	189622	S	8	1	9	0.00001
Bradyrhizobium sp. PSBB068	2715960	S	629	23030	23659	0.01795
Bradyrhizobium sp. 170	2782641	S	45	887	932	0.00071
Bradyrhizobium sp. CB82	3039159	S	30	437	467	0.00035
Bradyrhizobium sp. 186	2782654	S	30	576	606	0.00046
Bradyrhizobium sp. CB1015	2976822	S	21	729	750	0.00057
Bradyrhizobium sp. WD16	1521768	S	10	269	279	0.00021
Bradyrhizobium sp. 200	2782665	S	10	180	190	0.00014
Bradyrhizobium sp. S12-14-2	3056648	S	8	153	161	0.00012
Bradyrhizobium sp. 191	2782659	S	8	331	339	0.00026
Bradyrhizobium sp. NP1	3049772	S	6	123	129	0.00010
Bradyrhizobium sp. BTAi1	288000	S	5	163	168	0.00013
Bradyrhizobium erythrophlei	1437360	S	548	5852	6400	0.00485
Bradyrhizobium sediminis	2840469	S	407	9964	10371	0.00787
Bradyrhizobium lablabi	722472	S	175	14951	15126	0.01147
Bradyrhizobium canariense	255045	S	31	2024	2055	0.00156
Bradyrhizobium ottawaense	931866	S	25	7124	7149	0.00542
Bradyrhizobium betae	244734	S	16	4266	4282	0.00325
Bradyrhizobium diazoefficiens	1355477	S	9	1085	1094	0.00083
Bradyrhizobium paxllaeri	190148	S	8	163	171	0.00013
Bradyrhizobium barranii	2992140	S	7	919	926	0.00070
Bradyrhizobium oligotrophicum	44255	S	6	149	155	0.00012
Nitrobacter hamburgensis	912	S	54	1092	1146	0.00087
Afipia sp.	1871052	S	24	2422	2446	0.00186
Afipia sp. GAS231	1882747	S	7	524	531	0.00040
Rhodopseudomonas palustris	1076	S	9	391	400	0.00030
Bradyrhizobiaceae bacterium	2072420	S	6	438	444	0.00034
Phyllobacterium zundukense	1867719	S	8	120	128	0.00010
Hyphomicrobium sp. ghe19	2682968	S	78	553	631	0.00048
Hyphomicrobium denitrificans	53399	S	5	43	48	0.00004
Rhodoplanes sp. Z2-YC6860	674703	S	65	1069	1134	0.00086
Filomicrobium sp.	2024831	S	5	33	38	0.00003
Pseudolabrys taiwanensis	331696	S	42	1120	1162	0.00088
Pseudolabrys sp. FHR47	2562284	S	18	538	556	0.00042
Xanthobacteraceae bacterium	2021379	S	8	352	360	0.00027
Enhydrobacter sp.	1894999	S	45	2592	2637	0.00200
Pseudorhodoplanes sinuspersici	1235591	S	6	63	69	0.00005
Methylocapsa sp. D3K7	3041435	S	20	334	354	0.00027
Beijerinckiaceae bacterium	1978229	S	11	32	43	0.00003
Acidibrevibacterium fodinaquatile	1969806	S	10	747	757	0.00057
Rhodovastum atsumiense	504468	S	5	149	154	0.00012
Hypericibacter terrae	2602015	S	8	209	217	0.00016
Hypericibacter adhaerens	2602016	S	6	325	331	0.00025
Stella vacuolata	217070	S	7	364	371	0.00028
Rhodospirillales bacterium	2026786	S	15	397	412	0.00031
uncultured Alphaproteobacteria bacterium	91750	S	6	2102	2108	0.00160
Burkholderia cenocepacia	95486	S	70	33537	33607	0.02549
Burkholderia contaminans	488447	S	6	4885	4891	0.00371
Burkholderia pyrrocinia	60550	S	5	261	266	0.00020
Burkholderia cepacia	292	S	5	778	783	0.00059
Burkholderia sp. EMB26	2854261	S	7	5618	5625	0.00427
Paraburkholderia phytofirmans	261302	S	8	212	220	0.00017
Paraburkholderia fungorum	134537	S	7	1280	1287	0.00098
Polaromonas sp. P1-6	2895564	S	22	386	408	0.00031
Polaromonas sp. JS666	296591	S	18	341	359	0.00027
Polaromonas sp. P2-4	2895563	S	16	319	335	0.00025
Polaromonas sp. P1(28)-13	2895561	S	12	182	194	0.00015
Variovorax sp. HW608	1034889	S	9	359	368	0.00028
Variovorax paradoxus	34073	S	8	869	877	0.00067
Rhodoferax sediminis	2509614	S	18	425	443	0.00034
Rhodoferax sp. BAB1	2741720	S	8	353	361	0.00027
Ramlibacter tataouinensis	94132	S	12	778	790	0.00060
Acidovorax temperans	80878	S	6	4936	4942	0.00375
Comamonadaceae bacterium OS-1	2993872	S	11	176	187	0.00014
Collimonas fungivorans	158899	S	15	529	544	0.00041
Collimonas pratensis	279113	S	6	156	162	0.00012
Collimonas arenae	279058	S	5	82	87	0.00007
Glaciimonas sp. PAMC28666	2807626	S	21	208	229	0.00017
Piscinibacter sp. XHJ-5	3037797	S	49	1774	1823	0.00138
Sphaerotilus sulfidivorans	639200	S	8	824	832	0.00063
Leptothrix cholodnii	34029	S	5	422	427	0.00032
Rhizobacter sp. AJA081-3	2753607	S	13	1057	1070	0.00081
Burkholderiales bacterium	1891238	S	38	1691	1729	0.00131
Sulfuricella denitrificans	649841	S	128	1120	1248	0.00095
Sulfurimicrobium lacus	2715678	S	31	542	573	0.00043
Ferrigenium kumadai	1682490	S	48	1589	1637	0.00124
Candidatus Nitrotoga arctica	453162	S	7	18	25	0.00002
Sideroxydans sp. CL21	2600596	S	8	46	54	0.00004
uncultured Nitrosomonadaceae bacterium	207829	S	14	21605	21619	0.01640
Nitrosospira sp. NRS527	155925	S	6	24	30	0.00002
Rugosibacter aromaticivorans	1565605	S	10	1136	1146	0.00087
Usitatibacter palustris	2732487	S	15	272	287	0.00022
Usitatibacter rugosus	2732067	S	7	141	148	0.00011
Azoarcus sp. DN11	356837	S	6	341	347	0.00026
Betaproteobacteria bacterium	1891241	S	40	199	239	0.00018
Betaproteobacteria bacterium GR16-43	1904640	S	23	475	498	0.00038
Candidatus Desulfobacillus denitrificans	2608985	S	7	339	346	0.00026
uncultured beta proteobacterium	86027	S	9	18388	18397	0.01396
Pseudomonas sp. MYb193	1827300	S	16	1287	1303	0.00099
Pseudomonas sp. SDM007	2812000	S	7	559	566	0.00043
Pseudomonas sp. LG1D9	2083054	S	6	981	987	0.00075
Pseudomonas lundensis	86185	S	23	668	691	0.00052
Sulfuricaulis limicola	1620215	S	63	1056	1119	0.00085
Sulfurifustis variabilis	1675686	S	39	500	539	0.00041
Acinetobacter sp. TTH0-4	1646498	S	34	2773	2807	0.00213
Gammaproteobacteria bacterium	1913989	S	6	435	441	0.00033
uncultured Gammaproteobacteria bacterium	86473	S	5	994	999	0.00076
Acidithiobacillus ferrivorans	160808	S	13	122	135	0.00010
Geobacillus stearothermophilus	1422	S	315	4774	5089	0.00386
[Bacillus] caldolyticus	1394	S	14	690	704	0.00053
Geobacillus lituanicus	169283	S	11	322	333	0.00025
Geobacillus sp. E263	391290	S	5	44	49	0.00004
Geobacillus sp. LC300	1519377	S	5	133	138	0.00010
Geobacillus thermodenitrificans	33940	S	25	538	563	0.00043
Geobacillus subterraneus	129338	S	12	27	39	0.00003
Geobacillus genomosp. 3	1921421	S	5	5	10	0.00001
Anoxybacillus flavithermus	33934	S	2684	8491	11175	0.00848
Anoxybacillus sediminis	2613334	S	454	619	1073	0.00081
Anoxybacillus ayderensis	265546	S	6	33	39	0.00003
Anoxybacillus amylolyticus	294699	S	5	7	12	0.00001
Bacillus paralicheniformis	1648923	S	68	196	264	0.00020
Bacillus subtilis	1423	S	48	2562	2610	0.00198
Bacillus licheniformis	1402	S	18	1182	1200	0.00091
Bacillus smithii	1479	S	40	104	144	0.00011
Bacillus methanolicus	1471	S	18	29	47	0.00004
Bacillus sp. X1(2014)	1565991	S	7	15	22	0.00002
Bacillus glycinifermentans	1664069	S	15	16	31	0.00002
Shouchella clausii	79880	S	355	497	852	0.00065
Peribacillus psychrosaccharolyticus	1407	S	185	390	575	0.00044
Peribacillus asahii	228899	S	8	19	27	0.00002
Neobacillus thermocopriae	1215031	S	94	393	487	0.00037
Neobacillus novalis	220687	S	11	16	27	0.00002
Parageobacillus sp. KH3-4	2916802	S	19	20	39	0.00003
Parageobacillus caldoxylosilyticus	81408	S	17	179	196	0.00015
Parageobacillus thermoglucosidasius	1426	S	7	10	17	0.00001
Pradoshia sp. D12	2651284	S	43	45	88	0.00007
Lysinibacillus sp. 2017	2169540	S	20	45	65	0.00005
Psychrobacillus sp. INOP01	2829187	S	13	21	34	0.00003
Psychrobacillus glaciei	2283160	S	6	11	17	0.00001
Cytobacillus firmus	1399	S	13	39	52	0.00004
Niallia circulans	1397	S	8	15	23	0.00002
Aeribacillus pallidus	33936	S	8	85	93	0.00007
Thermoactinomyces vulgaris	2026	S	4005	6707	10712	0.00813
Thermoactinomyces sp. YT06	2507539	S	418	79	497	0.00038
Laceyella sacchari	37482	S	563	905	1468	0.00111
Novibacillus thermophilus	1471761	S	226	128	354	0.00027
Paenibacillus psychroresistens	1778678	S	453	132	585	0.00044
Paenibacillus sp. IHBB 10380	1566358	S	43	36	79	0.00006
Paenibacillus sp. BIHB 4019	1870819	S	34	11	45	0.00003
Paenibacillus sp. 32O-W	1695218	S	24	9	33	0.00003
Paenibacillus sp. R14(2021)	2859228	S	16	10	26	0.00002
Paenibacillus sp. FSL H7-0737	1536775	S	6	34	40	0.00003
Paenibacillus sp. HWE-109	1306526	S	5	2	7	0.00001
Paenibacillus ihbetae	1870820	S	44	25	69	0.00005
Paenibacillus antarcticus	253703	S	39	38	77	0.00006
Paenibacillus woosongensis	307580	S	30	31	61	0.00005
Paenibacillus andongensis	2975482	S	23	11	34	0.00003
Paenibacillus crassostreae	1763538	S	22	16	38	0.00003
Paenibacillus macerans	44252	S	16	22	38	0.00003
Paenibacillus amylolyticus	1451	S	9	76	85	0.00006
Paenibacillus glucanolyticus	59843	S	7	262	269	0.00020
Paenibacillus baekrokdamisoli	1712516	S	7	3	10	0.00001
Paenibacillus odorifer	189426	S	7	9	16	0.00001
Paenibacillus brasilensis	128574	S	5	11	16	0.00001
Paenibacillus rhizovicinus	2704463	S	5	3	8	0.00001
Paenibacillus konkukensis	2020716	S	5	3	8	0.00001
Thermobacillus composti	377615	S	221	150	371	0.00028
Brevibacillus sp. WF146	319501	S	19	123	142	0.00011
Brevibacillus marinus	2496837	S	8	22	30	0.00002
Cohnella abietis	2507935	S	7	10	17	0.00001
Cohnella cholangitidis	2598458	S	5	12	17	0.00001
Candidatus Pristimantibacillus lignocellulolyticus	2994561	S	9	4	13	0.00001
Sporosarcina sp. Marseille-Q4063	2810514	S	13	7	20	0.00002
Sporosarcina sp. resist	2762563	S	9	75	84	0.00006
Sporosarcina psychrophila	1476	S	20	212	232	0.00018
Sporosarcina thermotolerans	633404	S	5	6	11	0.00001
Ureibacillus thermosphaericus	51173	S	15	79	94	0.00007
Lactococcus lactis	1358	S	95	4020	4115	0.00312
Streptococcus thermophilus	1308	S	32	212	244	0.00019
Streptococcus dysgalactiae	1334	S	15	81	96	0.00007
Streptococcus uberis	1349	S	7	38	45	0.00003
Enterococcus thailandicus	417368	S	7	21	28	0.00002
Clostridium estertheticum	238834	S	108	264	372	0.00028
Clostridium tagluense	360422	S	12	31	43	0.00003
Clostridium pasteurianum	1501	S	5	5	10	0.00001
Romboutsia hominis	1507512	S	12	66	78	0.00006
Symbiobacterium thermophilum	2734	S	9	5	14	0.00001
Mycolicibacterium helvum	1534349	S	16	606	622	0.00047
Corynebacterium falsenii	108486	S	20	880	900	0.00068
Corynebacterium camporealensis	161896	S	6	39	45	0.00003
Corynebacterium xerosis	1725	S	5	162	167	0.00013
Rhodococcus opacus	37919	S	7	128	135	0.00010
Streptosporangium sp. 'caverna'	2202249	S	138	1607	1745	0.00132
Thermobispora bispora	2006	S	44	754	798	0.00061
Rothia dentocariosa	2047	S	10	162	172	0.00013
Cutibacterium acnes	1747	S	9	156	165	0.00013
Actinobacteria bacterium IMCC26256	1650658	S	14	2	16	0.00001
uncultured Actinomycetes bacterium	152507	S	11	10550	10561	0.00801
Conexibacter woesei	191495	S	21	73	94	0.00007
uncultured Conexibacter sp.	259313	S	7	4443	4450	0.00338
Capillimicrobium parvum	2884022	S	10	28	38	0.00003
Paraconexibacter antarcticus	2949664	S	8	17	25	0.00002
Parviterribacteraceae bacterium J379	2898438	S	5	8	13	0.00001
Miltoncostaea oceani	2843216	S	5	17	22	0.00002
Thermoleophilia bacterium SCSIO 60948	2730855	S	9	12	21	0.00002
Rubrobacter tropicus	2653851	S	36	12	48	0.00004
Baekduia soli	496014	S	7	24	31	0.00002
Baekduia alba	2997333	S	6	23	29	0.00002
Actinomarinicola tropica	2789776	S	5	43	48	0.00004
Ktedonobacteria bacterium brp13	2717365	S	107	71	178	0.00014
Ktedonobacterales bacterium	2306968	S	6	0	6	0.00000
uncultured Chloroflexota bacterium	166587	S	8	956	964	0.00073
uncultured Dehalococcoidia bacterium	498747	S	18	5	23	0.00002
Thermus thermophilus	274	S	8	21	29	0.00002
Fimbriimonas ginsengisoli	1005039	S	5	596	601	0.00046
uncultured bacterium	77133	S	1489	317692	319181	0.24212
uncultured bacterium contig00048	1181533	S	100	0	100	0.00008
uncultured bacterium contig00043	1181530	S	93	1	94	0.00007
uncultured soil bacterium	164851	S	63	11889	11952	0.00907
uncultured bacterium contig00009	1181501	S	55	1	56	0.00004
uncultured bacterium contig00032	1181521	S	53	0	53	0.00004
uncultured bacterium contig00012	1239453	S	15	1	16	0.00001
uncultured bacterium 270	698387	S	15	66	81	0.00006
uncultured bacterium F42-01	1191438	S	14	0	14	0.00001
uncultured bacterium 70	698392	S	13	68	81	0.00006
uncultured bacterium 213	698383	S	12	61	73	0.00006
uncultured bacterium 888	548896	S	12	0	12	0.00001
uncultured bacterium contig00020	1239454	S	12	0	12	0.00001
uncultured bacterium 5G4	1701326	S	11	51	62	0.00005
uncultured bacterium Rifle_16ft_4_minimus_19379	1665154	S	8	4	12	0.00001
uncultured bacterium Rifle_16ft_4_minimus_37862	1665157	S	7	0	7	0.00001
uncultured bacterium BAC10-4	333425	S	6	0	6	0.00000
uncultured bacterium contig00005	1181497	S	5	0	5	0.00000
uncultured bacterium ctg7180000001094	1425124	S	5	0	5	0.00000
Gemmata sp. SH-PL17	1630693	S	5	106	111	0.00008
Telmatocola sphagniphila	1123043	S	6	9	15	0.00001
Urbifossiella limnaea	2528023	S	5	52	57	0.00004
Singulisphaera acidiphila	466153	S	17	395	412	0.00031
Paludisphaera borealis	1387353	S	10	155	165	0.00013
Aquisphaera giovannonii	406548	S	6	62	68	0.00005
Anatilimnocola aggregata	2528021	S	8	44	52	0.00004
Phycisphaeraceae bacterium	2026777	S	5	163	168	0.00013
Phycisphaerales bacterium	2052180	S	5	55	60	0.00005
Humisphaera borealis	2807512	S	7	27	34	0.00003
Opitutus sp. GAS368	1882749	S	237	435	672	0.00051
Opitutus terrae	107709	S	7	12	19	0.00001
Lacunisphaera limnophila	1838286	S	13	27	40	0.00003
Opitutaceae bacterium TAV5	794903	S	9	22	31	0.00002
Nibricoccus aquaticus	2576891	S	5	3	8	0.00001
Fontisphaera persica	2974023	S	6	35	41	0.00003
Verrucomicrobia bacterium IMCC26134	1637999	S	10	20	30	0.00002
Criblamydia sequanensis	340071	S	9	22	31	0.00002
Sorangium cellulosum	56	S	22	282	304	0.00023
Minicystis rosea	888845	S	36	143	179	0.00014
Labilithrix luteola	1391654	S	25	75	100	0.00008
Sandaracinus amylolyticus	927083	S	17	67	84	0.00006
Haliangium ochraceum	80816	S	18	32	50	0.00004
Nannocystis poenicansa	2995304	S	6	12	18	0.00001
Archangium violaceum	83451	S	28	103	131	0.00010
Stigmatella aurantiaca	41	S	15	98	113	0.00009
Anaeromyxobacter oryzae	2918170	S	22	59	81	0.00006
Myxococcales bacterium	2026763	S	11	8	19	0.00001
Alloacidobacterium dinghuense	2763107	S	19	188	207	0.00016
Candidatus Koribacter versatilis	658062	S	6	16	22	0.00002
Paludibaculum fermentans	1473598	S	21	14	35	0.00003
uncultured Bryobacterales bacterium	2569091	S	5	65	70	0.00005
Luteitalea pratensis	1855912	S	29	22	51	0.00004
Luteitalea sp. TBR-22	2802971	S	21	33	54	0.00004
uncultured Vicinamibacterales bacterium	3036250	S	36	33	69	0.00005
uncultured Acidobacteriota bacterium	171953	S	33	13354	13387	0.01016
uncultured Acidobacteria bacterium cosmid p2H8	470733	S	5	0	5	0.00000
Holophagales bacterium	2478486	S	10	1	11	0.00001
Chryseolinea soli	2321403	S	29	120	149	0.00011
Flavobacteriales bacterium	2021391	S	5	58	63	0.00005
Panacibacter ginsenosidivorans	1813871	S	6	52	58	0.00004
Mucilaginibacter ginsenosidivorax	862126	S	7	77	84	0.00006
Gemmatirosa kalamazoonensis	861299	S	16	4	20	0.00002
Gemmatimonas groenlandica	2732249	S	6	1	7	0.00001
uncultured Gemmatimonas sp.	221169	S	5	1992	1997	0.00151
Gemmatimonadota bacterium	2026742	S	9	3	12	0.00001
Longimicrobiales bacterium	2910168	S	5	2	7	0.00001
Nitrospira sp.	70125	S	80	74	154	0.00012
uncultured Nitrospira sp.	157176	S	19	3311	3330	0.00253
Nitrospira tepida	2973512	S	5	6	11	0.00001
Candidatus Manganitrophus sp.	2927580	S	6	5	11	0.00001
uncultured Nitrospirae bacterium Rifle_16ft_4_minimus_10340	1665123	S	29	0	29	0.00002
Candidatus Nomurabacteria bacterium	2052152	S	19	12	31	0.00002
Candidatus Moranbacteria bacterium	2045217	S	13	15	28	0.00002
Candidatus Acetothermum autotrophicum	1446466	S	5	2	7	0.00001
Geobacter sp. FeAm09	2597769	S	22	43	65	0.00005
Elusimicrobiota bacterium	2030800	S	63	7	70	0.00005
Deltaproteobacteria bacterium	2026735	S	12	4	16	0.00001
uncultured Candidatus Entotheonella sp.	312019	S	11	4	15	0.00001
Candidatus Nitrosotalea okcheonensis	1903276	S	99	120	219	0.00017
Candidatus Nitrosotalea devanaterra	1078905	S	34	211	245	0.00019
Methanosarcina lacustris	170861	S	8	78	86	0.00007
uncultured archaeon	115547	S	29	9844	9873	0.00749
archaeon	1906665	S	9	119	128	0.00010
Myoviridae sp. ctu2j3	2825197	S	553	0	553	0.00042
Caudoviricetes sp.	2832643	S	101	198	299	0.00023
Geobacillus virus E3	1572712	S	40	2	42	0.00003
Rhodoferax phage P26218	1636270	S	5	0	5	0.00000
uncultured organism	155900	S	323	13162	13485	0.01023
uncultured prokaryote	198431	S	160	1947	2107	0.00160
unidentified	32644	S	25	411	436	0.00033