name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	17595	223697	241292	0.29740
Bos mutus	72004	S	5210	17036	22246	0.02742
Bos gaurus x Bos taurus	1705790	S	790	40033	40823	0.05032
Bos indicus x Bos taurus	30522	S	415	12845	13260	0.01634
Bos indicus	9915	S	229	11904	12133	0.01495
Bubalus bubalis	89462	S	591	4246	4837	0.00596
Bubalus carabanensis	346063	S	568	4291	4859	0.00599
Bison bison	9901	S	343	3717	4060	0.00500
Ovis canadensis	37174	S	859	935	1794	0.00221
Ovis aries	9940	S	161	589	750	0.00092
Capra hircus	9925	S	30	140	170	0.00021
Oryx dammah	59534	S	47	173	220	0.00027
Rangifer tarandus	9870	S	2981	8400	11381	0.01403
Odocoileus virginianus	9874	S	62	640	702	0.00087
Cervus elaphus	9860	S	1743	7089	8832	0.01089
Cervus canadensis	1574408	S	8	357	365	0.00045
Moschus berezovskii	68408	S	127	270	397	0.00049
Orcinus orca	9733	S	9	107	116	0.00014
Sus scrofa	9823	S	54	21	75	0.00009
Canis lupus	9612	S	92	23	115	0.00014
Homo sapiens	9606	S	316	7556	7872	0.00970
Gallus gallus	9031	S	26	12	38	0.00005
Aphis gossypii	80765	S	4435	1462	5897	0.00727
Myzus persicae	13164	S	5	7	12	0.00001
Periphyllus acericola	1425412	S	10	1	11	0.00001
Chymomyza fuscimana	1692350	S	12	201	213	0.00026
Penaeus vannamei	6689	S	5	3	8	0.00001
uncultured fungus	175245	S	27	1356	1383	0.00170
Campanula rotundifolia	239422	S	18	899	917	0.00113
Avena sativa	4498	S	25	233	258	0.00032
Bradyrhizobium sp. PSBB068	2715960	S	305	11726	12031	0.01483
Bradyrhizobium sp. 170	2782641	S	66	1357	1423	0.00175
Bradyrhizobium sp. 200	2782665	S	37	701	738	0.00091
Bradyrhizobium sp. CB82	3039159	S	16	245	261	0.00032
Bradyrhizobium sp. S12-14-2	3056648	S	15	300	315	0.00039
Bradyrhizobium sp. 191	2782659	S	13	594	607	0.00075
Bradyrhizobium sp. 186	2782654	S	13	263	276	0.00034
Bradyrhizobium sp. CCBAU 051011	858422	S	12	217	229	0.00028
Bradyrhizobium sp. CB1015	2976822	S	10	364	374	0.00046
Bradyrhizobium sp. 6(2017)	1197460	S	8	291	299	0.00037
Bradyrhizobium sp. NP1	3049772	S	6	128	134	0.00017
Bradyrhizobium sp. CB3481	3039158	S	5	90	95	0.00012
Bradyrhizobium sp. WD16	1521768	S	5	140	145	0.00018
Bradyrhizobium erythrophlei	1437360	S	321	3536	3857	0.00475
Bradyrhizobium sediminis	2840469	S	250	6342	6592	0.00812
Bradyrhizobium lablabi	722472	S	78	6475	6553	0.00808
Bradyrhizobium canariense	255045	S	24	1570	1594	0.00196
Bradyrhizobium ottawaense	931866	S	20	5600	5620	0.00693
Bradyrhizobium betae	244734	S	11	3007	3018	0.00372
Bradyrhizobium icense	1274631	S	9	180	189	0.00023
Bradyrhizobium paxllaeri	190148	S	9	188	197	0.00024
Bradyrhizobium oligotrophicum	44255	S	7	179	186	0.00023
Bradyrhizobium diazoefficiens	1355477	S	6	724	730	0.00090
Nitrobacter hamburgensis	912	S	33	679	712	0.00088
Afipia sp. GAS231	1882747	S	13	905	918	0.00113
Afipia sp.	1871052	S	12	1205	1217	0.00150
Rhodopseudomonas palustris	1076	S	11	494	505	0.00062
Mesorhizobium sp. AR10	2865839	S	9	593	602	0.00074
Hyphomicrobium sp. ghe19	2682968	S	73	558	631	0.00078
Hyphomicrobium sp. DMF-1	3019544	S	6	74	80	0.00010
Rhodoplanes sp. Z2-YC6860	674703	S	49	845	894	0.00110
Neorhizobium galegae	399	S	6	191	197	0.00024
Pseudolabrys taiwanensis	331696	S	13	370	383	0.00047
Pseudolabrys sp. FHR47	2562284	S	10	320	330	0.00041
Enhydrobacter sp.	1894999	S	30	1786	1816	0.00224
Methylocapsa sp. D3K7	3041435	S	12	220	232	0.00029
Acidibrevibacterium fodinaquatile	1969806	S	7	580	587	0.00072
Hypericibacter adhaerens	2602016	S	5	371	376	0.00046
Rhodospirillales bacterium	2026786	S	6	214	220	0.00027
Burkholderia cenocepacia	95486	S	66	33705	33771	0.04162
Burkholderia contaminans	488447	S	10	8308	8318	0.01025
Burkholderia cepacia	292	S	5	819	824	0.00102
Burkholderia sp. EMB26	2854261	S	6	5167	5173	0.00638
Cupriavidus necator	106590	S	7	573	580	0.00071
Polaromonas sp. P2-4	2895563	S	29	673	702	0.00087
Polaromonas sp. P1-6	2895564	S	27	553	580	0.00071
Polaromonas sp. JS666	296591	S	6	140	146	0.00018
Variovorax sp. HW608	1034889	S	16	812	828	0.00102
Variovorax paradoxus	34073	S	16	2088	2104	0.00259
Rhodoferax sp. AJA081-3	2752316	S	10	74	84	0.00010
Rhodoferax sp. BAB1	2741720	S	7	479	486	0.00060
Ramlibacter tataouinensis	94132	S	7	582	589	0.00073
Collimonas fungivorans	158899	S	10	438	448	0.00055
Glaciimonas sp. PAMC28666	2807626	S	10	130	140	0.00017
Piscinibacter sp. XHJ-5	3037797	S	55	2257	2312	0.00285
Leptothrix cholodnii	34029	S	7	713	720	0.00089
Rhizobacter sp. AJA081-3	2753607	S	16	1502	1518	0.00187
Rhizobacter gummiphilus	946333	S	11	641	652	0.00080
Burkholderiales bacterium	1891238	S	16	839	855	0.00105
Ferrigenium kumadai	1682490	S	19	1184	1203	0.00148
Sulfuricella denitrificans	649841	S	6	85	91	0.00011
Sulfurimicrobium lacus	2715678	S	5	182	187	0.00023
Rugosibacter aromaticivorans	1565605	S	7	1433	1440	0.00177
Usitatibacter rugosus	2732067	S	10	593	603	0.00074
Dechloromonas sp. A34	447588	S	5	178	183	0.00023
Betaproteobacteria bacterium	1891241	S	29	317	346	0.00043
Betaproteobacteria bacterium GR16-43	1904640	S	11	779	790	0.00097
Pseudomonas sp. MYb193	1827300	S	9	768	777	0.00096
Pseudomonas sp. NIBR-H-19	2901380	S	5	220	225	0.00028
Pseudomonas lundensis	86185	S	23	634	657	0.00081
Pseudomonas fluorescens	294	S	6	972	978	0.00121
Buchnera aphidicola	9	S	579	1730	2309	0.00285
Arsenophonus endosymbiont of Aphis craccivora	1231049	S	34	536	570	0.00070
Arsenophonus nasoniae	638	S	5	22	27	0.00003
Sulfurifustis variabilis	1675686	S	36	443	479	0.00059
Sulfuricaulis limicola	1620215	S	22	356	378	0.00047
Acinetobacter sp. TTH0-4	1646498	S	14	1032	1046	0.00129
Psychrobacter sp. WB2	3043330	S	5	16	21	0.00003
Acidithiobacillus ferrivorans	160808	S	14	107	121	0.00015
Geobacillus stearothermophilus	1422	S	234	3535	3769	0.00465
[Bacillus] caldolyticus	1394	S	9	434	443	0.00055
Geobacillus lituanicus	169283	S	7	199	206	0.00025
Geobacillus thermoleovorans	33941	S	6	244	250	0.00031
Geobacillus sp. E263	391290	S	15	126	141	0.00017
Geobacillus thermodenitrificans	33940	S	17	381	398	0.00049
Geobacillus genomosp. 3	1921421	S	5	4	9	0.00001
Anoxybacillus flavithermus	33934	S	1657	5175	6832	0.00842
Anoxybacillus sediminis	2613334	S	339	512	851	0.00105
Anoxybacillus ayderensis	265546	S	9	50	59	0.00007
Anoxybacillus gonensis	198467	S	7	54	61	0.00008
Bacillus paralicheniformis	1648923	S	24	72	96	0.00012
Bacillus subtilis	1423	S	23	1240	1263	0.00156
Bacillus licheniformis	1402	S	6	420	426	0.00053
Bacillus smithii	1479	S	23	63	86	0.00011
Bacillus sp. X1(2014)	1565991	S	8	13	21	0.00003
Bacillus glycinifermentans	1664069	S	9	10	19	0.00002
Bacillus methanolicus	1471	S	6	9	15	0.00002
Bacillus altitudinis	293387	S	5	211	216	0.00027
Shouchella clausii	79880	S	160	225	385	0.00047
Peribacillus psychrosaccharolyticus	1407	S	113	246	359	0.00044
Peribacillus asahii	228899	S	5	12	17	0.00002
Neobacillus thermocopriae	1215031	S	59	243	302	0.00037
Lysinibacillus sp. 2017	2169540	S	12	32	44	0.00005
Psychrobacillus sp. INOP01	2829187	S	16	20	36	0.00004
Pradoshia sp. D12	2651284	S	17	18	35	0.00004
Parageobacillus sp. KH3-4	2916802	S	6	6	12	0.00001
Aeribacillus pallidus	33936	S	10	105	115	0.00014
Heyndrickxia oleronia	38875	S	7	13	20	0.00002
Niallia circulans	1397	S	7	11	18	0.00002
Thermoactinomyces vulgaris	2026	S	1874	3279	5153	0.00635
Thermoactinomyces sp. YT06	2507539	S	197	39	236	0.00029
Laceyella sacchari	37482	S	385	643	1028	0.00127
Novibacillus thermophilus	1471761	S	142	86	228	0.00028
Paenibacillus psychroresistens	1778678	S	501	155	656	0.00081
Paenibacillus sp. IHBB 10380	1566358	S	29	25	54	0.00007
Paenibacillus sp. 32O-W	1695218	S	16	6	22	0.00003
Paenibacillus sp. HWE-109	1306526	S	13	6	19	0.00002
Paenibacillus sp. FSL H7-0737	1536775	S	11	41	52	0.00006
Paenibacillus sp. BIHB 4019	1870819	S	8	2	10	0.00001
Paenibacillus sp. R14(2021)	2859228	S	7	4	11	0.00001
Paenibacillus sp. sptzw28	715179	S	6	2	8	0.00001
Paenibacillus sp. PSB04	2866810	S	5	34	39	0.00005
Paenibacillus andongensis	2975482	S	43	25	68	0.00008
Paenibacillus woosongensis	307580	S	40	47	87	0.00011
Paenibacillus ihbetae	1870820	S	39	26	65	0.00008
Paenibacillus odorifer	189426	S	22	34	56	0.00007
Paenibacillus baekrokdamisoli	1712516	S	21	12	33	0.00004
Paenibacillus antarcticus	253703	S	19	19	38	0.00005
Paenibacillus amylolyticus	1451	S	14	154	168	0.00021
Paenibacillus macerans	44252	S	13	19	32	0.00004
Paenibacillus xylanexedens	528191	S	8	174	182	0.00022
Paenibacillus rhizovicinus	2704463	S	7	4	11	0.00001
Paenibacillus crassostreae	1763538	S	7	5	12	0.00001
Paenibacillus donghaensis	414771	S	5	2	7	0.00001
Thermobacillus composti	377615	S	278	210	488	0.00060
Brevibacillus sp. WF146	319501	S	9	11	20	0.00002
Brevibacillus agri	51101	S	6	121	127	0.00016
Cohnella abietis	2507935	S	6	25	31	0.00004
Candidatus Pristimantibacillus lignocellulolyticus	2994561	S	9	4	13	0.00002
Sporosarcina sp. resist	2762563	S	21	139	160	0.00020
Sporosarcina sp. Marseille-Q4063	2810514	S	8	4	12	0.00001
Sporosarcina psychrophila	1476	S	12	104	116	0.00014
Sporosarcina thermotolerans	633404	S	7	8	15	0.00002
Staphylococcus epidermidis	1282	S	7	77	84	0.00010
Staphylococcus capitis	29388	S	5	46	51	0.00006
Jeotgalicoccus sp. WY2	2708346	S	7	8	15	0.00002
Streptococcus thermophilus	1308	S	40	283	323	0.00040
Streptococcus uberis	1349	S	9	50	59	0.00007
Streptococcus dysgalactiae	1334	S	5	34	39	0.00005
Lactococcus lactis	1358	S	23	949	972	0.00120
Enterococcus thailandicus	417368	S	5	15	20	0.00002
Clostridium estertheticum	238834	S	100	236	336	0.00041
Clostridium tagluense	360422	S	6	15	21	0.00003
Clostridium gelidum	704125	S	5	11	16	0.00002
Romboutsia hominis	1507512	S	13	68	81	0.00010
Symbiobacterium thermophilum	2734	S	9	5	14	0.00002
Turicibacter sanguinis	154288	S	16	21	37	0.00005
Mycolicibacterium helvum	1534349	S	37	573	610	0.00075
Mycolicibacterium hassiacum	46351	S	13	502	515	0.00063
Mycolicibacterium sarraceniae	1534348	S	10	167	177	0.00022
Rhodococcus globerulus	33008	S	9	77	86	0.00011
Corynebacterium tuberculostearicum	38304	S	11	276	287	0.00035
Corynebacterium falsenii	108486	S	6	235	241	0.00030
Cutibacterium acnes	1747	S	244	3881	4125	0.00508
Cutibacterium granulosum	33011	S	21	207	228	0.00028
Cutibacterium modestum	2559073	S	12	75	87	0.00011
Nocardioides sp. dk884	2662361	S	5	141	146	0.00018
Nocardioides sp. InS609-2	2760705	S	5	52	57	0.00007
Glutamicibacter arilaitensis	256701	S	33	624	657	0.00081
Arthrobacter sp. PAMC25564	2565366	S	11	53	64	0.00008
Rothia dentocariosa	2047	S	6	40	46	0.00006
Pseudarthrobacter psychrotolerans	2697569	S	5	19	24	0.00003
Janibacter limosus	53458	S	14	186	200	0.00025
Streptomyces albus	1888	S	12	488	500	0.00062
Streptomyces atratus	1893	S	7	83	90	0.00011
Streptomyces thermocarboxydus	59299	S	6	135	141	0.00017
Streptosporangium sp. 'caverna'	2202249	S	81	950	1031	0.00127
Thermobispora bispora	2006	S	25	369	394	0.00049
Bifidobacterium pseudolongum	1694	S	5	63	68	0.00008
Conexibacter sp. SYSU D00693	2812560	S	6	450	456	0.00056
Conexibacter sp. S30A1	2937800	S	5	77	82	0.00010
Capillimicrobium parvum	2884022	S	9	449	458	0.00056
Paraconexibacter antarcticus	2949664	S	7	255	262	0.00032
Thermoleophilia bacterium SCSIO 60948	2730855	S	5	87	92	0.00011
Rubrobacter tropicus	2653851	S	21	71	92	0.00011
Baekduia soli	496014	S	6	365	371	0.00046
Baekduia alba	2997333	S	6	412	418	0.00052
Ktedonobacteria bacterium brp13	2717365	S	75	59	134	0.00017
uncultured Dehalococcoidia bacterium	498747	S	16	19	35	0.00004
Anaerolineales bacterium	2073117	S	6	23	29	0.00004
Thermus thermophilus	274	S	7	24	31	0.00004
uncultured bacterium	77133	S	970	213259	214229	0.26405
uncultured bacterium contig00048	1181533	S	64	0	64	0.00008
uncultured bacterium contig00043	1181530	S	58	1	59	0.00007
uncultured bacterium contig00032	1181521	S	47	0	47	0.00006
uncultured soil bacterium	164851	S	39	7663	7702	0.00949
uncultured bacterium contig00009	1181501	S	35	1	36	0.00004
uncultured bacterium 213	698383	S	11	59	70	0.00009
uncultured bacterium BAC10-4	333425	S	10	0	10	0.00001
uncultured bacterium contig00020	1239454	S	10	0	10	0.00001
uncultured bacterium contig00012	1239453	S	8	0	8	0.00001
uncultured bacterium contig00001	1181493	S	7	3	10	0.00001
uncultured bacterium F42-01	1191438	S	7	0	7	0.00001
uncultured bacterium Rifle_16ft_4_minimus_37862	1665157	S	6	0	6	0.00001
uncultured bacterium 70	698392	S	6	33	39	0.00005
uncultured bacterium 5G4	1701326	S	5	24	29	0.00004
uncultured bacterium F25-01	1191433	S	5	0	5	0.00001
uncultured bacterium contig00071	1239463	S	5	0	5	0.00001
Singulisphaera acidiphila	466153	S	12	687	699	0.00086
Paludisphaera borealis	1387353	S	7	15	22	0.00003
Maioricimonas rarisocia	2528026	S	5	5	10	0.00001
Opitutus sp. GAS368	1882749	S	214	288	502	0.00062
Opitutus terrae	107709	S	5	7	12	0.00001
Lacunisphaera limnophila	1838286	S	16	25	41	0.00005
Horticoccus luteus	2862869	S	11	11	22	0.00003
Opitutaceae bacterium TAV5	794903	S	7	14	21	0.00003
Fontisphaera persica	2974023	S	8	10	18	0.00002
Sorangium cellulosum	56	S	26	230	256	0.00032
Minicystis rosea	888845	S	17	44	61	0.00008
Polyangium aurulentum	2567896	S	6	35	41	0.00005
Labilithrix luteola	1391654	S	19	46	65	0.00008
Sandaracinus amylolyticus	927083	S	10	31	41	0.00005
Haliangium ochraceum	80816	S	13	16	29	0.00004
Archangium violaceum	83451	S	17	53	70	0.00009
Stigmatella aurantiaca	41	S	7	39	46	0.00006
Anaeromyxobacter oryzae	2918170	S	10	26	36	0.00004
Anaeromyxobacter paludicola	2918171	S	7	18	25	0.00003
Myxococcales bacterium	2026763	S	7	3	10	0.00001
Alloacidobacterium dinghuense	2763107	S	19	3	22	0.00003
Candidatus Koribacter versatilis	658062	S	7	167	174	0.00021
Paludibaculum fermentans	1473598	S	8	40	48	0.00006
Bryobacterales bacterium F-183	2802972	S	5	0	5	0.00001
Luteitalea sp. TBR-22	2802971	S	18	22	40	0.00005
Luteitalea pratensis	1855912	S	17	11	28	0.00003
uncultured Vicinamibacterales bacterium	3036250	S	37	27	64	0.00008
uncultured Acidobacteriota bacterium	171953	S	22	9198	9220	0.01136
Acidobacteriota bacterium	1978231	S	7	1	8	0.00001
Chryseolinea soli	2321403	S	25	88	113	0.00014
Panacibacter ginsenosidivorans	1813871	S	10	38	48	0.00006
Flavihumibacter fluvii	2838157	S	6	26	32	0.00004
uncultured Prevotellamassilia sp.	1926676	S	15	64	79	0.00010
Gemmatimonas groenlandica	2732249	S	6	6	12	0.00001
Gemmatirosa kalamazoonensis	861299	S	13	47	60	0.00007
uncultured Gemmatimonadetes bacterium Rifle_16ft_4_minimus_37772	1665097	S	7	8	15	0.00002
Gemmatimonadota bacterium	2026742	S	5	33	38	0.00005
Nitrospira sp.	70125	S	39	33	72	0.00009
uncultured Nitrospira sp.	157176	S	18	3203	3221	0.00397
Nitrospira tepida	2973512	S	9	9	18	0.00002
Candidatus Manganitrophus sp.	2927580	S	7	3	10	0.00001
uncultured Nitrospirae bacterium Rifle_16ft_4_minimus_10340	1665123	S	30	0	30	0.00004
Candidatus Moranbacteria bacterium	2045217	S	8	9	17	0.00002
Candidatus Methylomirabilis oxyfera	671143	S	8	4	12	0.00001
Elusimicrobiota bacterium	2030800	S	50	6	56	0.00007
bacterium	1869227	S	7	605	612	0.00075
Candidatus Nitrosotalea okcheonensis	1903276	S	38	75	113	0.00014
Candidatus Nitrosotalea devanaterra	1078905	S	13	144	157	0.00019
uncultured archaeon	115547	S	31	10187	10218	0.01259
archaeon	1906665	S	11	141	152	0.00019
Myoviridae sp. ctu2j3	2825197	S	447	0	447	0.00055
Caudoviricetes sp.	2832643	S	90	163	253	0.00031
Geobacillus virus E3	1572712	S	16	0	16	0.00002
Rhodoferax phage P26218	1636270	S	5	0	5	0.00001
uncultured Caudovirales phage	2100421	S	5	0	5	0.00001
uncultured organism	155900	S	174	6281	6455	0.00796
uncultured prokaryote	198431	S	97	1045	1142	0.00141
unidentified	32644	S	18	262	280	0.00035