name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	170960	1668433	1839393	0.57196
Bos mutus	72004	S	43106	112246	155352	0.04831
Bos gaurus x Bos taurus	1705790	S	11063	430705	441768	0.13737
Bos indicus x Bos taurus	30522	S	4332	104961	109293	0.03398
Bos indicus	9915	S	2332	94537	96869	0.03012
Bos grunniens	30521	S	25	1544	1569	0.00049
Bos frontalis	30520	S	15	243	258	0.00008
Bubalus carabanensis	346063	S	5115	29265	34380	0.01069
Bubalus bubalis	89462	S	5012	28262	33274	0.01035
Bison bison	9901	S	2964	25222	28186	0.00876
Bison bonasus	9902	S	8	52	60	0.00002
Tragelaphus scriptus	66440	S	143	271	414	0.00013
Tragelaphus oryx	9945	S	47	47	94	0.00003
Ovis canadensis	37174	S	9125	7753	16878	0.00525
Ovis aries	9940	S	1767	5018	6785	0.00211
Capra hircus	9925	S	329	1203	1532	0.00048
Budorcas taxicolor	37181	S	49	199	248	0.00008
Oryx dammah	59534	S	684	1771	2455	0.00076
Rangifer tarandus	9870	S	32761	70733	103494	0.03218
Odocoileus virginianus	9874	S	521	4184	4705	0.00146
Capreolus capreolus	9858	S	6	32	38	0.00001
Cervus elaphus	9860	S	22271	69430	91701	0.02851
Cervus canadensis	1574408	S	106	3618	3724	0.00116
Muntiacus vaginalis	9887	S	5	14	19	0.00001
Moschus berezovskii	68408	S	1074	1775	2849	0.00089
Orcinus orca	9733	S	29	406	435	0.00014
Physeter catodon	9755	S	14	183	197	0.00006
Delphinapterus leucas	9749	S	7	243	250	0.00008
Hyperoodon ampullatus	48744	S	9	37	46	0.00001
Balaenoptera acutorostrata	9767	S	40	384	424	0.00013
Hippopotamus amphibius	9833	S	7	9	16	0.00000
Sus scrofa	9823	S	447	136	583	0.00018
Canis lupus	9612	S	394	115	509	0.00016
Lutra lutra	9657	S	19	40	59	0.00002
Gulo gulo	48420	S	6	3	9	0.00000
Felis catus	9685	S	5	17	22	0.00001
Eptesicus nilssonii	59451	S	14	24	38	0.00001
Pipistrellus pipistrellus	59474	S	5	7	12	0.00000
Equus asinus	9793	S	5	8	13	0.00000
Homo sapiens	9606	S	295	10059	10354	0.00322
Heterocephalus glaber	10181	S	10	19	29	0.00001
Sylvilagus floridanus	9988	S	5	4	9	0.00000
Kluyveromyces marxianus	4911	S	16	7	23	0.00001
Trichoderma atroviride	63577	S	5	1	6	0.00000
Babesia ovata	189622	S	30	1	31	0.00001
Geobacillus stearothermophilus	1422	S	4652	34387	39039	0.01214
[Bacillus] caldolyticus	1394	S	101	2427	2528	0.00079
Geobacillus lituanicus	169283	S	89	1364	1453	0.00045
Geobacillus thermoleovorans	33941	S	66	1275	1341	0.00042
Geobacillus thermocatenulatus	33938	S	44	87	131	0.00004
Geobacillus kaustophilus	1462	S	26	566	592	0.00018
Geobacillus sp. JS12	1813182	S	68	378	446	0.00014
Geobacillus sp. E263	391290	S	53	268	321	0.00010
Geobacillus sp. LC300	1519377	S	24	349	373	0.00012
Geobacillus sp. Y412MC52	550542	S	22	227	249	0.00008
Geobacillus sp. CX412	2973804	S	15	136	151	0.00005
Geobacillus sp. 46C-IIa	1963025	S	13	7	20	0.00001
Geobacillus sp. GHH01	1233873	S	12	254	266	0.00008
Geobacillus sp. C56-T3	691437	S	5	39	44	0.00001
Geobacillus thermodenitrificans	33940	S	138	1583	1721	0.00054
Geobacillus zalihae	213419	S	69	982	1051	0.00033
Geobacillus genomosp. 3	1921421	S	56	24	80	0.00002
Geobacillus subterraneus	129338	S	53	52	105	0.00003
Anoxybacillus flavithermus	33934	S	20261	32465	52726	0.01640
Anoxybacillus ayderensis	265546	S	66	190	256	0.00008
Anoxybacillus gonensis	198467	S	41	189	230	0.00007
Anoxybacillus amylolyticus	294699	S	33	10	43	0.00001
Neobacillus thermocopriae	1215031	S	827	1755	2582	0.00080
Bacillus methanolicus	1471	S	112	35	147	0.00005
Bacillus subtilis	1423	S	7	140	147	0.00005
Bacillus glycinifermentans	1664069	S	7	1	8	0.00000
Parageobacillus caldoxylosilyticus	81408	S	28	187	215	0.00007
Parageobacillus toebii	153151	S	28	301	329	0.00010
Parageobacillus thermoglucosidasius	1426	S	14	9	23	0.00001
Aeribacillus pallidus	33936	S	15	57	72	0.00002
Staphylococcus chromogenes	46126	S	8	98	106	0.00003
Streptococcus thermophilus	1308	S	1043	1408	2451	0.00076
Streptococcus uberis	1349	S	216	503	719	0.00022
Streptococcus dysgalactiae	1334	S	122	417	539	0.00017
Streptococcus ruminantium	1917441	S	13	48	61	0.00002
Streptococcus infantarius	102684	S	8	55	63	0.00002
Streptococcus agalactiae	1311	S	6	77	83	0.00003
Lactococcus lactis	1358	S	124	2067	2191	0.00068
Lactococcus raffinolactis	1366	S	17	9	26	0.00001
Enterococcus saccharolyticus	41997	S	6	7	13	0.00000
Vagococcus lutrae	81947	S	6	4	10	0.00000
Jeotgalibaca porci	1868793	S	8	3	11	0.00000
Corynebacterium falsenii	108486	S	99	92	191	0.00006
Corynebacterium xerosis	1725	S	40	63	103	0.00003
Corynebacterium efficiens	152794	S	11	4	15	0.00000
Corynebacterium camporealensis	161896	S	10	4	14	0.00000
Corynebacterium casei	160386	S	9	25	34	0.00001
Corynebacterium stationis	1705	S	5	4	9	0.00000
Microbacterium sp. PAMC22086	2861281	S	9	68	77	0.00002
Rothia kristinae	37923	S	7	23	30	0.00001
Brachybacterium sp. Z12	2759167	S	5	14	19	0.00001
Bifidobacterium pseudolongum	1694	S	28	12	40	0.00001
Cutibacterium acnes	1747	S	8	17	25	0.00001
Propioniciclava sp. MC1595	2760308	S	6	7	13	0.00000
Trueperella pyogenes	1661	S	13	11	24	0.00001
Streptomyces sp. ICC1	2099583	S	5	29	34	0.00001
Thermus thermophilus	274	S	84	63	147	0.00005
Thermus parvatiensis	456163	S	10	38	48	0.00001
Mycoplasmopsis bovis	28903	S	6	0	6	0.00000
Burkholderia cenocepacia	95486	S	415	6943	7358	0.00229
Burkholderia contaminans	488447	S	54	633	687	0.00021
Burkholderia cepacia	292	S	41	135	176	0.00005
Burkholderia lata	482957	S	9	27	36	0.00001
Burkholderia vietnamiensis	60552	S	6	71	77	0.00002
Burkholderia sp. EMB26	2854261	S	6	269	275	0.00009
Ralstonia insidiosa	190721	S	5	7	12	0.00000
Pseudomonas sp. MYb193	1827300	S	176	1235	1411	0.00044
Pseudomonas sp. SDM007	2812000	S	56	222	278	0.00009
Pseudomonas sp. DTU12.1	2654238	S	36	655	691	0.00021
Pseudomonas sp. J380	2605424	S	34	318	352	0.00011
Pseudomonas sp. FDAARGOS_380	2018067	S	28	225	253	0.00008
Pseudomonas sp. LG1D9	2083054	S	27	463	490	0.00015
Pseudomonas sp. NIBR-H-19	2901380	S	22	26	48	0.00001
Pseudomonas sp. So3.2b	2864101	S	8	286	294	0.00009
Pseudomonas sp. SW-3	147212	S	5	179	184	0.00006
Pseudomonas lundensis	86185	S	311	190	501	0.00016
Pseudomonas fragi	296	S	33	169	202	0.00006
Pseudomonas protegens	380021	S	8	104	112	0.00003
Pseudomonas rhodesiae	76760	S	24	37	61	0.00002
Pseudomonas proteolytica	219574	S	15	89	104	0.00003
Pseudomonas fluorescens	294	S	12	80	92	0.00003
Pseudomonas azotoformans	47878	S	11	97	108	0.00003
Pseudomonas brenneri	129817	S	10	19	29	0.00001
Pseudomonas poae	200451	S	5	10	15	0.00000
Pseudomonas lurida	244566	S	20	343	363	0.00011
Pseudomonas psychrophila	122355	S	16	15	31	0.00001
Pseudomonas simiae	321846	S	8	14	22	0.00001
Pseudomonas shahriarae	2745512	S	5	196	201	0.00006
Acinetobacter sp. TTH0-4	1646498	S	462	600	1062	0.00033
Acinetobacter baumannii	470	S	16	274	290	0.00009
Acinetobacter johnsonii	40214	S	19	137	156	0.00005
Moraxella osloensis	34062	S	7	5	12	0.00000
Methylocaldum marinum	1432792	S	10	0	10	0.00000
Coxiella burnetii	777	S	5	0	5	0.00000
Cellvibrio sp. KY-GH-1	2303332	S	5	0	5	0.00000
Bradyrhizobium sp. PSBB068	2715960	S	7	6	13	0.00000
Caulobacter sp. FWC26	69665	S	7	3	10	0.00000
Asticcacaulis excentricus	78587	S	5	0	5	0.00000
Paracoccus alcaliphilus	34002	S	7	10	17	0.00001
Myoviridae sp. ctu2j3	2825197	S	1978	0	1978	0.00062
Caudoviricetes sp.	2832643	S	342	834	1176	0.00037
Geobacillus virus E3	1572712	S	147	9	156	0.00005
Deep-sea thermophilic phage D6E	749413	S	5	7	12	0.00000
Mogiana tick virus	1172985	S	12	0	12	0.00000
uncultured organism	155900	S	1780	92509	94289	0.02932