name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	78025	475529	553554	0.49926
Bos mutus	72004	S	15243	24724	39967	0.03605
Bos gaurus x Bos taurus	1705790	S	7736	189952	197688	0.17830
Bos indicus x Bos taurus	30522	S	1792	26380	28172	0.02541
Bos indicus	9915	S	1303	32012	33315	0.03005
Bos frontalis	30520	S	14	133	147	0.00013
Bos grunniens	30521	S	11	435	446	0.00040
Bubalus carabanensis	346063	S	1978	6712	8690	0.00784
Bubalus bubalis	89462	S	1862	6308	8170	0.00737
Bison bison	9901	S	1132	5800	6932	0.00625
Bison bonasus	9902	S	14	56	70	0.00006
Tragelaphus scriptus	66440	S	86	100	186	0.00017
Tragelaphus oryx	9945	S	13	7	20	0.00002
Ovis canadensis	37174	S	4220	1907	6127	0.00553
Ovis aries	9940	S	866	1426	2292	0.00207
Capra hircus	9925	S	153	323	476	0.00043
Budorcas taxicolor	37181	S	24	57	81	0.00007
Oryx dammah	59534	S	317	475	792	0.00071
Rangifer tarandus	9870	S	16311	22888	39199	0.03535
Odocoileus virginianus	9874	S	221	1126	1347	0.00121
Capreolus capreolus	9858	S	16	53	69	0.00006
Cervus elaphus	9860	S	12453	25185	37638	0.03395
Cervus canadensis	1574408	S	48	1055	1103	0.00099
Moschus berezovskii	68408	S	549	523	1072	0.00097
Orcinus orca	9733	S	17	173	190	0.00017
Delphinapterus leucas	9749	S	15	341	356	0.00032
Physeter catodon	9755	S	8	68	76	0.00007
Hyperoodon ampullatus	48744	S	8	21	29	0.00003
Balaenoptera acutorostrata	9767	S	35	224	259	0.00023
Sus scrofa	9823	S	294	46	340	0.00031
Canis lupus	9612	S	524	121	645	0.00058
Lutra lutra	9657	S	17	15	32	0.00003
Felis catus	9685	S	5	7	12	0.00001
Homo sapiens	9606	S	7358	59266	66624	0.06009
Pan troglodytes	9598	S	21	84	105	0.00009
Mus musculus	10090	S	10	40	50	0.00005
Gallus gallus	9031	S	137	31	168	0.00015
Meleagris gallopavo	9103	S	6	0	6	0.00001
Penaeus vannamei	6689	S	13	286	299	0.00027
Malassezia restricta	76775	S	95	65	160	0.00014
Malassezia globosa	76773	S	14	4	18	0.00002
Malassezia arunalokei	1514897	S	10	2	12	0.00001
Aureobasidium pullulans	5580	S	8	1	9	0.00001
Kluyveromyces marxianus	4911	S	7	4	11	0.00001
Arabidopsis thaliana	3702	S	7	4	11	0.00001
Solanum lycopersicum	4081	S	6	2	8	0.00001
Triticum aestivum	4565	S	12	21	33	0.00003
Babesia ovata	189622	S	33	0	33	0.00003
Naegleria fowleri	5763	S	8	0	8	0.00001
Geobacillus stearothermophilus	1422	S	2722	11623	14345	0.01294
[Bacillus] caldolyticus	1394	S	48	718	766	0.00069
Geobacillus thermoleovorans	33941	S	39	450	489	0.00044
Geobacillus lituanicus	169283	S	38	356	394	0.00036
Geobacillus thermocatenulatus	33938	S	33	32	65	0.00006
Geobacillus kaustophilus	1462	S	8	102	110	0.00010
Geobacillus sp. JS12	1813182	S	21	73	94	0.00008
Geobacillus sp. Y412MC52	550542	S	16	107	123	0.00011
Geobacillus sp. E263	391290	S	13	49	62	0.00006
Geobacillus sp. LC300	1519377	S	13	121	134	0.00012
Geobacillus sp. 46C-IIa	1963025	S	10	3	13	0.00001
Geobacillus sp. GHH01	1233873	S	10	135	145	0.00013
Geobacillus sp. CX412	2973804	S	5	34	39	0.00004
Geobacillus thermodenitrificans	33940	S	65	397	462	0.00042
Geobacillus genomosp. 3	1921421	S	29	6	35	0.00003
Geobacillus zalihae	213419	S	28	247	275	0.00025
Geobacillus subterraneus	129338	S	19	10	29	0.00003
Anoxybacillus flavithermus	33934	S	6826	5551	12377	0.01116
Anoxybacillus ayderensis	265546	S	23	50	73	0.00007
Anoxybacillus gonensis	198467	S	18	49	67	0.00006
Anoxybacillus amylolyticus	294699	S	11	1	12	0.00001
Neobacillus thermocopriae	1215031	S	262	359	621	0.00056
Parageobacillus toebii	153151	S	32	226	258	0.00023
Parageobacillus thermoglucosidasius	1426	S	7	3	10	0.00001
Parageobacillus caldoxylosilyticus	81408	S	7	33	40	0.00004
Bacillus methanolicus	1471	S	37	7	44	0.00004
Staphylococcus epidermidis	1282	S	146	223	369	0.00033
Staphylococcus capitis	29388	S	33	40	73	0.00007
Staphylococcus hominis	1290	S	8	6	14	0.00001
Staphylococcus pasteuri	45972	S	7	5	12	0.00001
Streptococcus thermophilus	1308	S	267	144	411	0.00037
Streptococcus uberis	1349	S	51	33	84	0.00008
Streptococcus dysgalactiae	1334	S	45	69	114	0.00010
Streptococcus infantarius	102684	S	13	45	58	0.00005
Streptococcus oralis	1303	S	9	6	15	0.00001
Streptococcus sanguinis	1305	S	5	1	6	0.00001
Lactococcus lactis	1358	S	67	402	469	0.00042
Lactococcus raffinolactis	1366	S	9	2	11	0.00001
Lentilactobacillus parabuchneri	152331	S	5	3	8	0.00001
Enterococcus avium	33945	S	6	2	8	0.00001
Cutibacterium acnes	1747	S	662	981	1643	0.00148
Cutibacterium granulosum	33011	S	19	5	24	0.00002
Nocardioides sp. zg-1228	2763008	S	6	31	37	0.00003
Rothia dentocariosa	2047	S	141	38	179	0.00016
Micrococcus luteus	1270	S	7	43	50	0.00005
Janibacter indicus	857417	S	11	37	48	0.00004
Janibacter limosus	53458	S	6	5	11	0.00001
Corynebacterium tuberculostearicum	38304	S	33	42	75	0.00007
Corynebacterium matruchotii	43768	S	22	3	25	0.00002
Corynebacterium falsenii	108486	S	20	15	35	0.00003
Corynebacterium xerosis	1725	S	18	16	34	0.00003
Corynebacterium accolens	38284	S	6	23	29	0.00003
Corynebacterium casei	160386	S	5	13	18	0.00002
Mycolicibacterium hassiacum	46351	S	14	16	30	0.00003
Dietzia timorensis	499555	S	14	11	25	0.00002
Actinomyces sp. oral taxon 171	706438	S	7	7	14	0.00001
Actinomyces sp. oral taxon 169	712116	S	5	12	17	0.00002
Trueperella pyogenes	1661	S	14	18	32	0.00003
Bifidobacterium pseudolongum	1694	S	20	6	26	0.00002
Thermus thermophilus	274	S	24	7	31	0.00003
Thermus parvatiensis	456163	S	15	23	38	0.00003
Burkholderia cenocepacia	95486	S	851	9487	10338	0.00932
Burkholderia contaminans	488447	S	81	609	690	0.00062
Burkholderia cepacia	292	S	71	165	236	0.00021
Burkholderia lata	482957	S	11	25	36	0.00003
Burkholderia sp. EMB26	2854261	S	27	747	774	0.00070
Ralstonia insidiosa	190721	S	12	5	17	0.00002
Serratia marcescens	615	S	395	3482	3877	0.00350
Serratia nematodiphila	458197	S	9	372	381	0.00034
Serratia ureilytica	300181	S	5	124	129	0.00012
Pseudomonas sp. MYb193	1827300	S	106	481	587	0.00053
Pseudomonas sp. SDM007	2812000	S	34	86	120	0.00011
Pseudomonas sp. DTU12.1	2654238	S	33	383	416	0.00038
Pseudomonas sp. J380	2605424	S	29	174	203	0.00018
Pseudomonas sp. LG1D9	2083054	S	23	251	274	0.00025
Pseudomonas sp. NIBR-H-19	2901380	S	11	8	19	0.00002
Pseudomonas sp. FDAARGOS_380	2018067	S	9	47	56	0.00005
Pseudomonas lundensis	86185	S	136	48	184	0.00017
Pseudomonas fragi	296	S	7	22	29	0.00003
Pseudomonas proteolytica	219574	S	13	52	65	0.00006
Pseudomonas rhodesiae	76760	S	9	9	18	0.00002
Pseudomonas fluorescens	294	S	7	69	76	0.00007
Pseudomonas tolaasii	29442	S	5	5	10	0.00001
Pseudomonas lurida	244566	S	13	146	159	0.00014
Pseudomonas psychrophila	122355	S	9	4	13	0.00001
Pseudomonas putida	303	S	5	36	41	0.00004
Pseudomonas luteola	47886	S	5	9	14	0.00001
Stutzerimonas stutzeri	316	S	12	17	29	0.00003
Acinetobacter sp. TTH0-4	1646498	S	156	130	286	0.00026
Acinetobacter johnsonii	40214	S	10	39	49	0.00004
Acinetobacter baumannii	470	S	5	49	54	0.00005
Moraxella osloensis	34062	S	11	3	14	0.00001
Psychrobacter sanguinis	861445	S	6	1	7	0.00001
Xanthomonas campestris	339	S	5	16	21	0.00002
Haemophilus parainfluenzae	729	S	7	4	11	0.00001
Bradyrhizobium sp. PSBB068	2715960	S	7	48	55	0.00005
Methylobacterium bullatum	570505	S	5	12	17	0.00002
Paracoccus yeei	147645	S	40	72	112	0.00010
bacterium	1869227	S	466	2137	2603	0.00235
Myoviridae sp. ctu2j3	2825197	S	3095	0	3095	0.00279
Caudoviricetes sp.	2832643	S	559	323	882	0.00080
Geobacillus virus E3	1572712	S	42	0	42	0.00004
Mogiana tick virus	1172985	S	31	0	31	0.00003
uncultured organism	155900	S	783	9562	10345	0.00933
unidentified	32644	S	9	44	53	0.00005