name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	43566	227432	270998	0.50067
Bos mutus	72004	S	7430	10290	17720	0.03274
Bos gaurus x Bos taurus	1705790	S	5213	108778	113991	0.21060
Bos indicus x Bos taurus	30522	S	1114	14107	15221	0.02812
Bos indicus	9915	S	846	17964	18810	0.03475
Bos grunniens	30521	S	5	162	167	0.00031
Bubalus carabanensis	346063	S	937	2843	3780	0.00698
Bubalus bubalis	89462	S	909	2759	3668	0.00678
Bison bison	9901	S	462	2056	2518	0.00465
Tragelaphus scriptus	66440	S	39	37	76	0.00014
Tragelaphus oryx	9945	S	20	10	30	0.00006
Ovis canadensis	37174	S	2262	1026	3288	0.00607
Ovis aries	9940	S	397	595	992	0.00183
Capra hircus	9925	S	110	211	321	0.00059
Budorcas taxicolor	37181	S	12	26	38	0.00007
Oryx dammah	59534	S	145	196	341	0.00063
Rangifer tarandus	9870	S	9134	9967	19101	0.03529
Odocoileus virginianus	9874	S	137	556	693	0.00128
Cervus elaphus	9860	S	7283	11498	18781	0.03470
Cervus canadensis	1574408	S	31	540	571	0.00105
Moschus berezovskii	68408	S	268	226	494	0.00091
Orcinus orca	9733	S	12	120	132	0.00024
Lagenorhynchus obliquidens	90247	S	6	182	188	0.00035
Hyperoodon ampullatus	48744	S	10	28	38	0.00007
Physeter catodon	9755	S	6	48	54	0.00010
Balaenoptera acutorostrata	9767	S	34	184	218	0.00040
Sus scrofa	9823	S	198	32	230	0.00042
Canis lupus	9612	S	142	47	189	0.00035
Lutra lutra	9657	S	11	23	34	0.00006
Eptesicus nilssonii	59451	S	9	13	22	0.00004
Homo sapiens	9606	S	125	2401	2526	0.00467
Mus musculus	10090	S	6	34	40	0.00007
Heterocephalus glaber	10181	S	12	13	25	0.00005
Kluyveromyces marxianus	4911	S	5	0	5	0.00001
Babesia ovata	189622	S	28	0	28	0.00005
Burkholderia cenocepacia	95486	S	582	6196	6778	0.01252
Burkholderia cepacia	292	S	42	102	144	0.00027
Burkholderia contaminans	488447	S	28	198	226	0.00042
Burkholderia pyrrocinia	60550	S	8	11	19	0.00004
Burkholderia vietnamiensis	60552	S	8	58	66	0.00012
Burkholderia stabilis	95485	S	8	12	20	0.00004
Burkholderia anthina	179879	S	8	13	21	0.00004
Burkholderia sp. EMB26	2854261	S	24	609	633	0.00117
Bradyrhizobium sp. PSBB068	2715960	S	4206	493	4699	0.00868
Bradyrhizobium sp. BTAi1	288000	S	16	0	16	0.00003
Bradyrhizobium betae	244734	S	78	104	182	0.00034
Afipia sp.	1871052	S	81	12	93	0.00017
Asticcacaulis excentricus	78587	S	17	5	22	0.00004
Brevundimonas sp. DS20	1532555	S	5	11	16	0.00003
Pseudomonas sp. MYb193	1827300	S	40	130	170	0.00031
Pseudomonas sp. DTU12.1	2654238	S	32	247	279	0.00052
Pseudomonas sp. LG1D9	2083054	S	15	109	124	0.00023
Pseudomonas sp. J380	2605424	S	11	49	60	0.00011
Pseudomonas sp. SDM007	2812000	S	7	13	20	0.00004
Pseudomonas sp. So3.2b	2864101	S	6	100	106	0.00020
Pseudomonas lundensis	86185	S	57	23	80	0.00015
Pseudomonas fragi	296	S	6	15	21	0.00004
Pseudomonas proteolytica	219574	S	8	27	35	0.00006
Pseudomonas fluorescens	294	S	8	31	39	0.00007
Pseudomonas citronellolis	53408	S	5	18	23	0.00004
Pseudomonas psychrophila	122355	S	8	4	12	0.00002
Pseudomonas lurida	244566	S	5	40	45	0.00008
Acinetobacter sp. TTH0-4	1646498	S	57	55	112	0.00021
Alcanivorax sp.	1872427	S	11	4	15	0.00003
Geobacillus stearothermophilus	1422	S	1447	5712	7159	0.01323
Geobacillus lituanicus	169283	S	24	203	227	0.00042
Geobacillus thermoleovorans	33941	S	21	226	247	0.00046
[Bacillus] caldolyticus	1394	S	20	269	289	0.00053
Geobacillus kaustophilus	1462	S	10	122	132	0.00024
Geobacillus thermocatenulatus	33938	S	7	7	14	0.00003
Geobacillus sp. LC300	1519377	S	16	128	144	0.00027
Geobacillus sp. E263	391290	S	12	40	52	0.00010
Geobacillus sp. JS12	1813182	S	12	36	48	0.00009
Geobacillus sp. CX412	2973804	S	7	41	48	0.00009
Geobacillus sp. GHH01	1233873	S	5	57	62	0.00011
Geobacillus thermodenitrificans	33940	S	33	208	241	0.00045
Geobacillus zalihae	213419	S	22	171	193	0.00036
Geobacillus subterraneus	129338	S	10	5	15	0.00003
Geobacillus genomosp. 3	1921421	S	10	2	12	0.00002
Anoxybacillus flavithermus	33934	S	3142	3200	6342	0.01172
Anoxybacillus gonensis	198467	S	10	31	41	0.00008
Anoxybacillus ayderensis	265546	S	9	19	28	0.00005
Anoxybacillus amylolyticus	294699	S	9	1	10	0.00002
Neobacillus thermocopriae	1215031	S	138	196	334	0.00062
Parageobacillus toebii	153151	S	15	115	130	0.00024
Parageobacillus thermoglucosidasius	1426	S	5	3	8	0.00001
Bacillus methanolicus	1471	S	11	3	14	0.00003
Streptococcus thermophilus	1308	S	119	100	219	0.00040
Streptococcus uberis	1349	S	21	28	49	0.00009
Streptococcus dysgalactiae	1334	S	17	67	84	0.00016
Lactococcus lactis	1358	S	27	179	206	0.00038
Lactococcus raffinolactis	1366	S	5	2	7	0.00001
Corynebacterium falsenii	108486	S	23	24	47	0.00009
Corynebacterium xerosis	1725	S	11	13	24	0.00004
Cutibacterium acnes	1747	S	41	58	99	0.00018
Trueperella pyogenes	1661	S	7	2	9	0.00002
Bifidobacterium pseudolongum	1694	S	5	2	7	0.00001
Thermus thermophilus	274	S	23	21	44	0.00008
Myoviridae sp. ctu2j3	2825197	S	1963	0	1963	0.00363
Caudoviricetes sp.	2832643	S	289	642	931	0.00172
Geobacillus virus E3	1572712	S	26	0	26	0.00005
Mogiana tick virus	1172985	S	28	4	32	0.00006
uncultured organism	155900	S	409	11878	12287	0.02270