name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	259501	1463765	1723266	0.51719
Bos mutus	72004	S	51868	77332	129200	0.03878
Bos gaurus x Bos taurus	1705790	S	27385	619870	647255	0.19425
Bos indicus x Bos taurus	30522	S	6252	83669	89921	0.02699
Bos indicus	9915	S	4902	109897	114799	0.03445
Bos grunniens	30521	S	32	1204	1236	0.00037
Bos frontalis	30520	S	31	296	327	0.00010
Bos gaurus	9904	S	8	33	41	0.00001
Bubalus carabanensis	346063	S	6657	20810	27467	0.00824
Bubalus bubalis	89462	S	6349	19689	26038	0.00781
Bison bison	9901	S	3439	15851	19290	0.00579
Bison bonasus	9902	S	13	54	67	0.00002
Tragelaphus scriptus	66440	S	275	318	593	0.00018
Tragelaphus oryx	9945	S	80	45	125	0.00004
Tragelaphus eurycerus	69297	S	6	6	12	0.00000
Ovis canadensis	37174	S	17532	7793	25325	0.00760
Ovis aries	9940	S	2770	4462	7232	0.00217
Capra hircus	9925	S	548	1103	1651	0.00050
Budorcas taxicolor	37181	S	96	215	311	0.00009
Oryx dammah	59534	S	1080	1511	2591	0.00078
Rangifer tarandus	9870	S	67417	79758	147175	0.04417
Odocoileus virginianus	9874	S	899	3970	4869	0.00146
Capreolus capreolus	9858	S	10	29	39	0.00001
Cervus elaphus	9860	S	52805	90272	143077	0.04294
Cervus canadensis	1574408	S	175	3272	3447	0.00103
Muntiacus vaginalis	9887	S	6	16	22	0.00001
Moschus berezovskii	68408	S	1841	1619	3460	0.00104
Orcinus orca	9733	S	90	652	742	0.00022
Lagenorhynchus albirostris	27610	S	11	55	66	0.00002
Lagenorhynchus obliquidens	90247	S	11	221	232	0.00007
Globicephala melas	9731	S	8	164	172	0.00005
Tursiops truncatus	9739	S	6	141	147	0.00004
Hyperoodon ampullatus	48744	S	91	167	258	0.00008
Delphinapterus leucas	9749	S	36	563	599	0.00018
Monodon monoceros	40151	S	15	274	289	0.00009
Physeter catodon	9755	S	39	228	267	0.00008
Phocoena sinus	42100	S	32	499	531	0.00016
Balaenoptera acutorostrata	9767	S	175	744	919	0.00028
Balaenoptera musculus	9771	S	9	133	142	0.00004
Hippopotamus amphibius	9833	S	24	14	38	0.00001
Sus scrofa	9823	S	1200	195	1395	0.00042
Phacochoerus africanus	41426	S	5	2	7	0.00000
Vicugna pacos	30538	S	8	12	20	0.00001
Canis lupus	9612	S	1027	189	1216	0.00036
Lutra lutra	9657	S	94	136	230	0.00007
Meles meles	9662	S	24	23	47	0.00001
Gulo gulo	48420	S	10	4	14	0.00000
Halichoerus grypus	9711	S	5	69	74	0.00002
Felis catus	9685	S	29	52	81	0.00002
Eptesicus nilssonii	59451	S	43	71	114	0.00003
Pipistrellus pipistrellus	59474	S	29	47	76	0.00002
Pteropus giganteus	143291	S	6	19	25	0.00001
Equus asinus	9793	S	14	10	24	0.00001
Equus caballus	9796	S	10	8	18	0.00001
Equus quagga	89248	S	6	7	13	0.00000
Equus przewalskii	9798	S	5	8	13	0.00000
Homo sapiens	9606	S	568	9068	9636	0.00289
Callithrix jacchus	9483	S	5	20	25	0.00001
Mus musculus	10090	S	15	115	130	0.00004
Acomys russatus	60746	S	5	24	29	0.00001
Chionomys nivalis	269649	S	5	17	22	0.00001
Heterocephalus glaber	10181	S	40	52	92	0.00003
Sylvilagus floridanus	9988	S	13	2	15	0.00000
Oryctolagus cuniculus	9986	S	5	24	29	0.00001
Cyprinus carpio	7962	S	5	52	57	0.00002
Euphydryas editha	104508	S	5	3774	3779	0.00113
Kluyveromyces marxianus	4911	S	16	4	20	0.00001
Trichoderma atroviride	63577	S	5	1	6	0.00000
Babesia ovata	189622	S	93	2	95	0.00003
Geobacillus stearothermophilus	1422	S	7969	30907	38876	0.01167
Geobacillus lituanicus	169283	S	144	1214	1358	0.00041
[Bacillus] caldolyticus	1394	S	116	1576	1692	0.00051
Geobacillus thermoleovorans	33941	S	103	1107	1210	0.00036
Geobacillus thermocatenulatus	33938	S	71	73	144	0.00004
Geobacillus kaustophilus	1462	S	45	685	730	0.00022
Geobacillus sp. JS12	1813182	S	84	262	346	0.00010
Geobacillus sp. LC300	1519377	S	70	569	639	0.00019
Geobacillus sp. E263	391290	S	61	204	265	0.00008
Geobacillus sp. Y412MC52	550542	S	43	251	294	0.00009
Geobacillus sp. CX412	2973804	S	23	143	166	0.00005
Geobacillus sp. 12AMOR1	1629723	S	22	143	165	0.00005
Geobacillus sp. GHH01	1233873	S	21	248	269	0.00008
Geobacillus sp. 46C-IIa	1963025	S	16	4	20	0.00001
Geobacillus sp. C56-T3	691437	S	15	67	82	0.00002
Geobacillus sp. 44B	1963023	S	6	49	55	0.00002
Geobacillus sp. 47C-IIb	1963026	S	5	93	98	0.00003
Geobacillus thermodenitrificans	33940	S	254	1552	1806	0.00054
Geobacillus zalihae	213419	S	126	985	1111	0.00033
Geobacillus subterraneus	129338	S	79	42	121	0.00004
Geobacillus genomosp. 3	1921421	S	75	17	92	0.00003
Anoxybacillus flavithermus	33934	S	22824	20192	43016	0.01291
Anoxybacillus ayderensis	265546	S	81	157	238	0.00007
Anoxybacillus gonensis	198467	S	72	199	271	0.00008
Anoxybacillus amylolyticus	294699	S	65	11	76	0.00002
Anoxybacillus caldiproteolyticus	247480	S	12	2	14	0.00000
Neobacillus thermocopriae	1215031	S	1053	1362	2415	0.00072
Bacillus methanolicus	1471	S	132	22	154	0.00005
Bacillus subtilis	1423	S	9	103	112	0.00003
Bacillus glycinifermentans	1664069	S	7	0	7	0.00000
Parageobacillus toebii	153151	S	64	429	493	0.00015
Parageobacillus caldoxylosilyticus	81408	S	37	159	196	0.00006
Parageobacillus thermoglucosidasius	1426	S	23	12	35	0.00001
Aeribacillus pallidus	33936	S	21	46	67	0.00002
Staphylococcus chromogenes	46126	S	8	5	13	0.00000
Staphylococcus simulans	1286	S	6	2	8	0.00000
Staphylococcus aureus	1280	S	5	112	117	0.00004
Streptococcus thermophilus	1308	S	1099	750	1849	0.00055
Streptococcus uberis	1349	S	220	238	458	0.00014
Streptococcus dysgalactiae	1334	S	140	278	418	0.00013
Streptococcus infantarius	102684	S	19	70	89	0.00003
Streptococcus ruminantium	1917441	S	17	35	52	0.00002
Streptococcus agalactiae	1311	S	6	42	48	0.00001
Streptococcus parasuis	1501662	S	5	5	10	0.00000
Streptococcus pyogenes	1314	S	5	7	12	0.00000
Lactococcus lactis	1358	S	139	1349	1488	0.00045
Lactococcus raffinolactis	1366	S	17	4	21	0.00001
Lactococcus carnosus	2749961	S	6	19	25	0.00001
Leuconostoc gasicomitatum	115778	S	5	4	9	0.00000
Enterococcus saccharolyticus	41997	S	6	7	13	0.00000
Vagococcus lutrae	81947	S	7	2	9	0.00000
Jeotgalibaca porci	1868793	S	8	1	9	0.00000
Corynebacterium falsenii	108486	S	104	97	201	0.00006
Corynebacterium xerosis	1725	S	42	55	97	0.00003
Corynebacterium efficiens	152794	S	11	3	14	0.00000
Corynebacterium camporealensis	161896	S	10	4	14	0.00000
Corynebacterium casei	160386	S	9	28	37	0.00001
Corynebacterium stationis	1705	S	6	4	10	0.00000
Corynebacterium variabile	1727	S	5	5	10	0.00000
Microbacterium sp. PAMC22086	2861281	S	9	66	75	0.00002
Brachybacterium sp. Z12	2759167	S	7	24	31	0.00001
Janibacter limosus	53458	S	6	24	30	0.00001
Rothia kristinae	37923	S	7	20	27	0.00001
Micrococcus lylae	1273	S	5	6	11	0.00000
Ornithinimicrobium sp. HY1793	2934158	S	5	10	15	0.00000
Cutibacterium acnes	1747	S	8	9	17	0.00001
Propioniciclava sp. MC1595	2760308	S	6	8	14	0.00000
Bifidobacterium pseudolongum	1694	S	30	11	41	0.00001
Trueperella pyogenes	1661	S	14	13	27	0.00001
Streptomyces sp. ICC1	2099583	S	5	33	38	0.00001
Thermus thermophilus	274	S	95	41	136	0.00004
Thermus parvatiensis	456163	S	15	34	49	0.00001
Mycoplasmopsis bovis	28903	S	6	0	6	0.00000
Burkholderia cenocepacia	95486	S	671	6735	7406	0.00222
Burkholderia cepacia	292	S	69	147	216	0.00006
Burkholderia contaminans	488447	S	58	392	450	0.00014
Burkholderia lata	482957	S	11	22	33	0.00001
Burkholderia vietnamiensis	60552	S	9	61	70	0.00002
Burkholderia multivorans	87883	S	9	15	24	0.00001
Burkholderia stabilis	95485	S	7	9	16	0.00000
Burkholderia sp. EMB26	2854261	S	15	374	389	0.00012
Ralstonia insidiosa	190721	S	5	3	8	0.00000
Acidovorax sp. KKS102	358220	S	5	11	16	0.00000
Pseudomonas sp. MYb193	1827300	S	245	977	1222	0.00037
Pseudomonas sp. DTU12.1	2654238	S	72	781	853	0.00026
Pseudomonas sp. SDM007	2812000	S	68	146	214	0.00006
Pseudomonas sp. LG1D9	2083054	S	66	675	741	0.00022
Pseudomonas sp. J380	2605424	S	52	273	325	0.00010
Pseudomonas sp. FDAARGOS_380	2018067	S	40	173	213	0.00006
Pseudomonas sp. NIBR-H-19	2901380	S	29	19	48	0.00001
Pseudomonas sp. So3.2b	2864101	S	13	245	258	0.00008
Pseudomonas sp. SW-3	147212	S	5	95	100	0.00003
Pseudomonas sp. B21-059	2895496	S	5	42	47	0.00001
Pseudomonas lundensis	86185	S	325	105	430	0.00013
Pseudomonas fragi	296	S	49	131	180	0.00005
Pseudomonas protegens	380021	S	14	96	110	0.00003
Pseudomonas proteolytica	219574	S	28	90	118	0.00004
Pseudomonas rhodesiae	76760	S	28	25	53	0.00002
Pseudomonas fluorescens	294	S	26	96	122	0.00004
Pseudomonas brenneri	129817	S	13	14	27	0.00001
Pseudomonas azotoformans	47878	S	12	62	74	0.00002
Pseudomonas poae	200451	S	7	8	15	0.00000
Pseudomonas synxantha	47883	S	6	12	18	0.00001
Pseudomonas mandelii	75612	S	5	56	61	0.00002
Pseudomonas lurida	244566	S	33	298	331	0.00010
Pseudomonas psychrophila	122355	S	29	14	43	0.00001
Pseudomonas salmasensis	2745514	S	12	36	48	0.00001
Pseudomonas simiae	321846	S	8	7	15	0.00000
Pseudomonas shahriarae	2745512	S	6	124	130	0.00004
Acinetobacter sp. TTH0-4	1646498	S	466	343	809	0.00024
Acinetobacter baumannii	470	S	24	229	253	0.00008
Acinetobacter johnsonii	40214	S	23	91	114	0.00003
Moraxella osloensis	34062	S	7	2	9	0.00000
Escherichia coli	562	S	5	378	383	0.00011
Methylocaldum marinum	1432792	S	10	0	10	0.00000
Cellvibrio sp. KY-GH-1	2303332	S	9	0	9	0.00000
Coxiella burnetii	777	S	5	0	5	0.00000
Bradyrhizobium sp. PSBB068	2715960	S	7	9	16	0.00000
Caulobacter sp. FWC26	69665	S	7	3	10	0.00000
Asticcacaulis excentricus	78587	S	6	0	6	0.00000
Paracoccus alcaliphilus	34002	S	7	9	16	0.00000
uncultured bacterium	77133	S	6	145	151	0.00005
uncultured organism	155900	S	2905	66970	69875	0.02097
Myoviridae sp. ctu2j3	2825197	S	1985	0	1985	0.00060
Caudoviricetes sp.	2832643	S	345	378	723	0.00022
Geobacillus virus E3	1572712	S	271	7	278	0.00008
Deep-sea thermophilic phage D6E	749413	S	5	3	8	0.00000
Mogiana tick virus	1172985	S	94	2	96	0.00003