name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	51592	211679	263271	0.47913
Bos mutus	72004	S	8475	9165	17640	0.03210
Bos gaurus x Bos taurus	1705790	S	7045	115983	123028	0.22390
Bos indicus x Bos taurus	30522	S	1417	13639	15056	0.02740
Bos indicus	9915	S	1133	18308	19441	0.03538
Bos grunniens	30521	S	5	131	136	0.00025
Bubalus carabanensis	346063	S	1037	2390	3427	0.00624
Bubalus bubalis	89462	S	1004	2321	3325	0.00605
Bison bison	9901	S	502	1673	2175	0.00396
Tragelaphus scriptus	66440	S	50	38	88	0.00016
Tragelaphus oryx	9945	S	21	8	29	0.00005
Tragelaphus strepsiceros	9946	S	5	2	7	0.00001
Ovis canadensis	37174	S	2972	1014	3986	0.00725
Ovis aries	9940	S	493	577	1070	0.00195
Capra hircus	9925	S	130	191	321	0.00058
Budorcas taxicolor	37181	S	19	31	50	0.00009
Oryx dammah	59534	S	178	183	361	0.00066
Rangifer tarandus	9870	S	12578	10381	22959	0.04178
Odocoileus virginianus	9874	S	175	539	714	0.00130
Cervus elaphus	9860	S	10284	12285	22569	0.04107
Cervus canadensis	1574408	S	39	516	555	0.00101
Moschus berezovskii	68408	S	331	205	536	0.00098
Orcinus orca	9733	S	19	166	185	0.00034
Lagenorhynchus obliquidens	90247	S	7	171	178	0.00032
Lagenorhynchus albirostris	27610	S	5	30	35	0.00006
Hyperoodon ampullatus	48744	S	32	69	101	0.00018
Physeter catodon	9755	S	9	55	64	0.00012
Delphinapterus leucas	9749	S	5	99	104	0.00019
Balaenoptera acutorostrata	9767	S	71	296	367	0.00067
Hippopotamus amphibius	9833	S	5	2	7	0.00001
Sus scrofa	9823	S	303	36	339	0.00062
Canis lupus	9612	S	237	51	288	0.00052
Lutra lutra	9657	S	24	31	55	0.00010
Meles meles	9662	S	13	11	24	0.00004
Felis catus	9685	S	7	12	19	0.00003
Pipistrellus pipistrellus	59474	S	7	10	17	0.00003
Eptesicus nilssonii	59451	S	15	17	32	0.00006
Homo sapiens	9606	S	155	2267	2422	0.00441
Mus musculus	10090	S	13	49	62	0.00011
Chionomys nivalis	269649	S	6	6	12	0.00002
Heterocephalus glaber	10181	S	17	15	32	0.00006
Cyprinus carpio	7962	S	5	26	31	0.00006
Euphydryas editha	104508	S	8	962	970	0.00177
Kluyveromyces marxianus	4911	S	5	0	5	0.00001
Babesia ovata	189622	S	62	1	63	0.00011
Burkholderia cenocepacia	95486	S	740	6065	6805	0.01238
Burkholderia cepacia	292	S	57	123	180	0.00033
Burkholderia contaminans	488447	S	31	167	198	0.00036
Burkholderia stabilis	95485	S	11	13	24	0.00004
Burkholderia pyrrocinia	60550	S	9	9	18	0.00003
Burkholderia vietnamiensis	60552	S	9	49	58	0.00011
Burkholderia anthina	179879	S	9	12	21	0.00004
Burkholderia metallica	488729	S	8	7	15	0.00003
Burkholderia lata	482957	S	7	13	20	0.00004
Burkholderia ambifaria	152480	S	6	6	12	0.00002
Burkholderia latens	488446	S	5	32	37	0.00007
Burkholderia sp. EMB26	2854261	S	26	499	525	0.00096
Bradyrhizobium sp. PSBB068	2715960	S	4293	406	4699	0.00855
Bradyrhizobium sp. BTAi1	288000	S	16	0	16	0.00003
Bradyrhizobium betae	244734	S	78	84	162	0.00029
Afipia sp.	1871052	S	81	9	90	0.00016
Asticcacaulis excentricus	78587	S	20	2	22	0.00004
Brevundimonas sp. DS20	1532555	S	5	11	16	0.00003
Pseudomonas sp. MYb193	1827300	S	44	113	157	0.00029
Pseudomonas sp. DTU12.1	2654238	S	43	268	311	0.00057
Pseudomonas sp. LG1D9	2083054	S	18	105	123	0.00022
Pseudomonas sp. J380	2605424	S	12	42	54	0.00010
Pseudomonas sp. SDM007	2812000	S	8	11	19	0.00003
Pseudomonas sp. So3.2b	2864101	S	6	78	84	0.00015
Pseudomonas lundensis	86185	S	58	17	75	0.00014
Pseudomonas fragi	296	S	8	15	23	0.00004
Pseudomonas fluorescens	294	S	10	31	41	0.00007
Pseudomonas proteolytica	219574	S	8	21	29	0.00005
Pseudomonas psychrophila	122355	S	9	3	12	0.00002
Pseudomonas citronellolis	53408	S	5	14	19	0.00003
Pseudomonas lurida	244566	S	6	37	43	0.00008
Acinetobacter sp. TTH0-4	1646498	S	57	45	102	0.00019
Alcanivorax sp.	1872427	S	11	4	15	0.00003
Geobacillus stearothermophilus	1422	S	1614	5296	6910	0.01258
Geobacillus lituanicus	169283	S	28	200	228	0.00041
Geobacillus thermoleovorans	33941	S	25	227	252	0.00046
[Bacillus] caldolyticus	1394	S	20	228	248	0.00045
Geobacillus thermocatenulatus	33938	S	16	14	30	0.00005
Geobacillus kaustophilus	1462	S	11	115	126	0.00023
Geobacillus sp. LC300	1519377	S	18	123	141	0.00026
Geobacillus sp. JS12	1813182	S	16	41	57	0.00010
Geobacillus sp. E263	391290	S	12	34	46	0.00008
Geobacillus sp. CX412	2973804	S	7	36	43	0.00008
Geobacillus sp. Y412MC52	550542	S	6	28	34	0.00006
Geobacillus sp. 12AMOR1	1629723	S	6	32	38	0.00007
Geobacillus sp. GHH01	1233873	S	5	49	54	0.00010
Geobacillus thermodenitrificans	33940	S	43	225	268	0.00049
Geobacillus zalihae	213419	S	25	165	190	0.00035
Geobacillus subterraneus	129338	S	12	5	17	0.00003
Geobacillus genomosp. 3	1921421	S	10	2	12	0.00002
Anoxybacillus flavithermus	33934	S	3292	2674	5966	0.01086
Anoxybacillus amylolyticus	294699	S	13	2	15	0.00003
Anoxybacillus ayderensis	265546	S	11	21	32	0.00006
Anoxybacillus gonensis	198467	S	10	27	37	0.00007
Neobacillus thermocopriae	1215031	S	154	179	333	0.00061
Parageobacillus toebii	153151	S	17	105	122	0.00022
Parageobacillus thermoglucosidasius	1426	S	5	1	6	0.00001
Parageobacillus caldoxylosilyticus	81408	S	5	19	24	0.00004
Bacillus methanolicus	1471	S	11	1	12	0.00002
Streptococcus thermophilus	1308	S	119	78	197	0.00036
Streptococcus uberis	1349	S	22	22	44	0.00008
Streptococcus dysgalactiae	1334	S	19	58	77	0.00014
Lactococcus lactis	1358	S	28	142	170	0.00031
Lactococcus raffinolactis	1366	S	5	2	7	0.00001
Corynebacterium falsenii	108486	S	23	28	51	0.00009
Corynebacterium xerosis	1725	S	11	14	25	0.00005
Cutibacterium acnes	1747	S	41	46	87	0.00016
Trueperella pyogenes	1661	S	7	3	10	0.00002
Bifidobacterium pseudolongum	1694	S	5	1	6	0.00001
Thermus thermophilus	274	S	26	17	43	0.00008
uncultured bacterium	77133	S	5	115	120	0.00022
Myoviridae sp. ctu2j3	2825197	S	1964	0	1964	0.00357
Caudoviricetes sp.	2832643	S	289	552	841	0.00153
Geobacillus virus E3	1572712	S	35	0	35	0.00006
Mogiana tick virus	1172985	S	34	5	39	0.00007
uncultured organism	155900	S	453	9817	10270	0.01869