name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
Bos taurus	9913	S	106480	426875	533355	0.46922
Bos mutus	72004	S	18465	19500	37965	0.03340
Bos gaurus x Bos taurus	1705790	S	13829	224209	238038	0.20941
Bos indicus x Bos taurus	30522	S	2510	23257	25767	0.02267
Bos indicus	9915	S	2151	33349	35500	0.03123
Bos frontalis	30520	S	17	111	128	0.00011
Bos grunniens	30521	S	11	302	313	0.00028
Bubalus carabanensis	346063	S	2420	5135	7555	0.00665
Bubalus bubalis	89462	S	2210	4690	6900	0.00607
Bison bison	9901	S	1260	3992	5252	0.00462
Bison bonasus	9902	S	19	54	73	0.00006
Tragelaphus scriptus	66440	S	128	105	233	0.00020
Tragelaphus oryx	9945	S	18	7	25	0.00002
Ovis canadensis	37174	S	6539	1838	8377	0.00737
Ovis aries	9940	S	1188	1289	2477	0.00218
Capra hircus	9925	S	215	291	506	0.00045
Budorcas taxicolor	37181	S	39	59	98	0.00009
Oryx dammah	59534	S	459	432	891	0.00078
Rangifer tarandus	9870	S	27877	24186	52063	0.04580
Odocoileus virginianus	9874	S	344	1093	1437	0.00126
Capreolus capreolus	9858	S	19	39	58	0.00005
Cervus elaphus	9860	S	22978	28772	51750	0.04553
Cervus canadensis	1574408	S	66	903	969	0.00085
Moschus berezovskii	68408	S	768	438	1206	0.00106
Orcinus orca	9733	S	51	338	389	0.00034
Lagenorhynchus albirostris	27610	S	8	37	45	0.00004
Tursiops truncatus	9739	S	7	145	152	0.00013
Pseudorca crassidens	82174	S	7	10	17	0.00001
Globicephala melas	9731	S	5	90	95	0.00008
Hyperoodon ampullatus	48744	S	45	69	114	0.00010
Delphinapterus leucas	9749	S	24	321	345	0.00030
Monodon monoceros	40151	S	9	140	149	0.00013
Physeter catodon	9755	S	22	104	126	0.00011
Phocoena sinus	42100	S	7	93	100	0.00009
Balaenoptera acutorostrata	9767	S	114	389	503	0.00044
Balaenoptera musculus	9771	S	9	107	116	0.00010
Hippopotamus amphibius	9833	S	5	2	7	0.00001
Sus scrofa	9823	S	616	67	683	0.00060
Vicugna pacos	30538	S	5	4	9	0.00001
Canis lupus	9612	S	806	159	965	0.00085
Lutra lutra	9657	S	44	38	82	0.00007
Meles meles	9662	S	16	9	25	0.00002
Ursus arctos	9644	S	5	30	35	0.00003
Felis catus	9685	S	21	19	40	0.00004
Pipistrellus pipistrellus	59474	S	12	33	45	0.00004
Eptesicus nilssonii	59451	S	17	40	57	0.00005
Equus caballus	9796	S	8	4	12	0.00001
Equus quagga	89248	S	5	3	8	0.00001
Homo sapiens	9606	S	7778	42944	50722	0.04462
Pan troglodytes	9598	S	32	92	124	0.00011
Pongo abelii	9601	S	5	11	16	0.00001
Macaca mulatta	9544	S	10	11	21	0.00002
Nycticebus coucang	9470	S	5	1	6	0.00001
Mus musculus	10090	S	22	56	78	0.00007
Chionomys nivalis	269649	S	5	12	17	0.00001
Heterocephalus glaber	10181	S	24	24	48	0.00004
Sylvilagus floridanus	9988	S	5	2	7	0.00001
Gallus gallus	9031	S	139	28	167	0.00015
Meleagris gallopavo	9103	S	9	0	9	0.00001
Salmo trutta	8032	S	5	52	57	0.00005
Penaeus vannamei	6689	S	14	637	651	0.00057
Malassezia restricta	76775	S	96	58	154	0.00014
Malassezia globosa	76773	S	17	5	22	0.00002
Malassezia arunalokei	1514897	S	10	2	12	0.00001
Aureobasidium pullulans	5580	S	11	2	13	0.00001
Kluyveromyces marxianus	4911	S	7	2	9	0.00001
Arabidopsis thaliana	3702	S	8	6	14	0.00001
Cucumis sativus	3659	S	5	10	15	0.00001
Solanum lycopersicum	4081	S	7	3	10	0.00001
Triticum aestivum	4565	S	16	26	42	0.00004
Babesia ovata	189622	S	84	2	86	0.00008
Naegleria fowleri	5763	S	9	0	9	0.00001
Geobacillus stearothermophilus	1422	S	3650	10644	14294	0.01258
[Bacillus] caldolyticus	1394	S	58	611	669	0.00059
Geobacillus thermoleovorans	33941	S	54	438	492	0.00043
Geobacillus lituanicus	169283	S	53	345	398	0.00035
Geobacillus thermocatenulatus	33938	S	44	30	74	0.00007
Geobacillus kaustophilus	1462	S	16	146	162	0.00014
Geobacillus sp. JS12	1813182	S	34	83	117	0.00010
Geobacillus sp. LC300	1519377	S	28	181	209	0.00018
Geobacillus sp. Y412MC52	550542	S	21	98	119	0.00010
Geobacillus sp. E263	391290	S	17	47	64	0.00006
Geobacillus sp. 46C-IIa	1963025	S	14	3	17	0.00001
Geobacillus sp. 12AMOR1	1629723	S	10	51	61	0.00005
Geobacillus sp. GHH01	1233873	S	10	94	104	0.00009
Geobacillus sp. CX412	2973804	S	9	47	56	0.00005
Geobacillus sp. C56-T3	691437	S	5	17	22	0.00002
Geobacillus thermodenitrificans	33940	S	90	385	475	0.00042
Geobacillus genomosp. 3	1921421	S	46	7	53	0.00005
Geobacillus zalihae	213419	S	45	275	320	0.00028
Geobacillus subterraneus	129338	S	30	11	41	0.00004
Anoxybacillus flavithermus	33934	S	7352	4336	11688	0.01028
Anoxybacillus gonensis	198467	S	24	50	74	0.00007
Anoxybacillus ayderensis	265546	S	24	40	64	0.00006
Anoxybacillus amylolyticus	294699	S	19	2	21	0.00002
Neobacillus thermocopriae	1215031	S	314	317	631	0.00056
Parageobacillus toebii	153151	S	41	218	259	0.00023
Parageobacillus thermoglucosidasius	1426	S	10	4	14	0.00001
Parageobacillus caldoxylosilyticus	81408	S	9	32	41	0.00004
Bacillus methanolicus	1471	S	38	5	43	0.00004
Staphylococcus epidermidis	1282	S	148	155	303	0.00027
Staphylococcus capitis	29388	S	33	28	61	0.00005
Staphylococcus pasteuri	45972	S	8	4	12	0.00001
Staphylococcus hominis	1290	S	8	5	13	0.00001
Streptococcus thermophilus	1308	S	276	109	385	0.00034
Streptococcus uberis	1349	S	51	23	74	0.00007
Streptococcus dysgalactiae	1334	S	47	57	104	0.00009
Streptococcus infantarius	102684	S	15	36	51	0.00004
Streptococcus oralis	1303	S	10	5	15	0.00001
Streptococcus mitis	28037	S	5	2	7	0.00001
Streptococcus sanguinis	1305	S	5	0	5	0.00000
Lactococcus lactis	1358	S	71	272	343	0.00030
Lactococcus raffinolactis	1366	S	10	2	12	0.00001
Lentilactobacillus parabuchneri	152331	S	5	2	7	0.00001
Enterococcus avium	33945	S	6	1	7	0.00001
Cutibacterium acnes	1747	S	672	666	1338	0.00118
Cutibacterium granulosum	33011	S	19	5	24	0.00002
Nocardioides sp. zg-1228	2763008	S	8	36	44	0.00004
Rothia dentocariosa	2047	S	143	36	179	0.00016
Micrococcus luteus	1270	S	7	44	51	0.00004
Janibacter indicus	857417	S	15	45	60	0.00005
Janibacter limosus	53458	S	7	8	15	0.00001
Microbacterium liquefaciens	33918	S	5	23	28	0.00002
Microbacterium aurum	36805	S	5	11	16	0.00001
Corynebacterium tuberculostearicum	38304	S	35	36	71	0.00006
Corynebacterium matruchotii	43768	S	22	2	24	0.00002
Corynebacterium falsenii	108486	S	20	16	36	0.00003
Corynebacterium xerosis	1725	S	20	16	36	0.00003
Corynebacterium humireducens	1223514	S	7	1	8	0.00001
Corynebacterium afermentans	38286	S	7	12	19	0.00002
Corynebacterium accolens	38284	S	7	18	25	0.00002
Corynebacterium hansenii	394964	S	6	2	8	0.00001
Corynebacterium casei	160386	S	5	14	19	0.00002
Mycolicibacterium hassiacum	46351	S	14	16	30	0.00003
Dietzia timorensis	499555	S	14	15	29	0.00003
Actinomyces sp. oral taxon 169	712116	S	7	8	15	0.00001
Actinomyces sp. oral taxon 171	706438	S	7	5	12	0.00001
Actinomyces oris	544580	S	6	8	14	0.00001
Trueperella pyogenes	1661	S	14	32	46	0.00004
Bifidobacterium pseudolongum	1694	S	21	8	29	0.00003
Thermus thermophilus	274	S	29	8	37	0.00003
Thermus parvatiensis	456163	S	16	17	33	0.00003
Burkholderia cenocepacia	95486	S	1160	9297	10457	0.00920
Burkholderia cepacia	292	S	98	184	282	0.00025
Burkholderia contaminans	488447	S	91	482	573	0.00050
Burkholderia lata	482957	S	14	25	39	0.00003
Burkholderia anthina	179879	S	11	14	25	0.00002
Burkholderia stabilis	95485	S	8	9	17	0.00001
Burkholderia pyrrocinia	60550	S	7	7	14	0.00001
Burkholderia seminalis	488731	S	6	5	11	0.00001
Burkholderia multivorans	87883	S	6	2	8	0.00001
Burkholderia ambifaria	152480	S	6	6	12	0.00001
Burkholderia sp. EMB26	2854261	S	34	648	682	0.00060
Burkholderia sp. NRF60-BP8	1637853	S	5	5	10	0.00001
Ralstonia insidiosa	190721	S	12	7	19	0.00002
Serratia marcescens	615	S	559	3357	3916	0.00345
Serratia nematodiphila	458197	S	12	339	351	0.00031
Serratia ureilytica	300181	S	6	102	108	0.00010
Serratia surfactantfaciens	2741499	S	5	4	9	0.00001
Pseudomonas sp. MYb193	1827300	S	124	381	505	0.00044
Pseudomonas sp. DTU12.1	2654238	S	49	407	456	0.00040
Pseudomonas sp. SDM007	2812000	S	44	73	117	0.00010
Pseudomonas sp. J380	2605424	S	38	153	191	0.00017
Pseudomonas sp. LG1D9	2083054	S	34	266	300	0.00026
Pseudomonas sp. FDAARGOS_380	2018067	S	16	54	70	0.00006
Pseudomonas sp. NIBR-H-19	2901380	S	12	6	18	0.00002
Pseudomonas lundensis	86185	S	151	35	186	0.00016
Pseudomonas fragi	296	S	12	24	36	0.00003
Pseudomonas proteolytica	219574	S	13	35	48	0.00004
Pseudomonas fluorescens	294	S	12	83	95	0.00008
Pseudomonas rhodesiae	76760	S	10	8	18	0.00002
Pseudomonas tolaasii	29442	S	5	3	8	0.00001
Pseudomonas poae	200451	S	5	5	10	0.00001
Pseudomonas lurida	244566	S	19	135	154	0.00014
Pseudomonas psychrophila	122355	S	13	4	17	0.00001
Pseudomonas putida	303	S	5	19	24	0.00002
Pseudomonas luteola	47886	S	5	5	10	0.00001
Pseudomonas salmasensis	2745514	S	5	11	16	0.00001
Stutzerimonas stutzeri	316	S	13	16	29	0.00003
Acinetobacter sp. TTH0-4	1646498	S	157	88	245	0.00022
Acinetobacter johnsonii	40214	S	11	40	51	0.00004
Acinetobacter baumannii	470	S	5	39	44	0.00004
Moraxella osloensis	34062	S	11	2	13	0.00001
Psychrobacter sanguinis	861445	S	6	1	7	0.00001
Xanthomonas campestris	339	S	5	14	19	0.00002
Haemophilus parainfluenzae	729	S	7	3	10	0.00001
Bradyrhizobium sp. PSBB068	2715960	S	7	52	59	0.00005
Methylobacterium bullatum	570505	S	5	12	17	0.00001
Agrobacterium tumefaciens	358	S	5	17	22	0.00002
Paracoccus yeei	147645	S	44	72	116	0.00010
Paracoccus sp. AK26	2589076	S	5	1	6	0.00001
bacterium	1869227	S	543	1732	2275	0.00200
uncultured bacterium	77133	S	14	154	168	0.00015
Myoviridae sp. ctu2j3	2825197	S	3099	0	3099	0.00273
Caudoviricetes sp.	2832643	S	561	220	781	0.00069
Geobacillus virus E3	1572712	S	70	0	70	0.00006
Mogiana tick virus	1172985	S	56	0	56	0.00005
Cardiovirus A	1821749	S	5	16	21	0.00002
uncultured organism	155900	S	975	8073	9048	0.00796
unidentified	32644	S	9	30	39	0.00003