fastp report

Summary

General

fastp version: 0.23.4 (https://github.com/OpenGene/fastp)

sequencing: paired end (150 cycles + 150 cycles)

mean length before filtering: 150bp, 150bp

duplication rate: 12.176325%

Insert size peak: 142

Before filtering

total reads: 41.128010 M

total bases: 6.169201 G

Q20 bases: 6.000612 G (97.267238%)

Q30 bases: 5.748590 G (93.182077%)

GC content: 61.704916%

After filtering

total reads: 27.228600 M

total bases: 4.278936 G

Q20 bases: 4.169922 G (97.452311%)

Q30 bases: 3.986234 G (93.159465%)

GC content: 62.204303%

Filtering result

reads passed filters: 40.938367 M (99.538896%)

reads corrected: 1.247001 M (3.031999%)

bases corrected: 2.949261 M (0.047806%)

reads with low quality: 179.491000 K (0.436420%)

reads with too many N: 3.026000 K (0.007358%)

reads too short: 5.762000 K (0.014010%)

reads with low complexity: 1.364000 K (0.003316%)

Adapters

Adapter or bad ligation of read1

Sequence Occurrences

A 108389

AG 108817

AGA 108403

AGAT 108220

AGATC 108581

AGATCG 108652

AGATCGG 108042

AGATCGGA 109893

AGATCGGAA 108814

AGATCGGAAG 108302

AGATCGGAAGA 109202

AGATCGGAAGAG 107793

AGATCGGAAGAGC 107785

AGATCGGAAGAGCA 107783

AGATCGGAAGAGCAC 106692

AGATCGGAAGAGCACA 105357

AGATCGGAAGAGCACAC 105499

AGATCGGAAGAGCACACG 105305

AGATCGGAAGAGCACACGT 104379

AGATCGGAAGAGCACACGTC 103957

AGATCGGAAGAGCACACGTCT 102416

AGATCGGAAGAGCACACGTCTG 101715

AGATCGGAAGAGCACACGTCTGA 100518

AGATCGGAAGAGCACACGTCTGAA 99252

AGATCGGAAGAGCACACGTCTGAAC 98238

AGATCGGAAGAGCACACGTCTGAACT 96864

AGATCGGAAGAGCACACGTCTGAACTC 95028

AGATCGGAAGAGCACACGTCTGAACTCC 94108

AGATCGGAAGAGCACACGTCTGAACTCCA 93993

AGATCGGAAGAGCACACGTCTGAACTCCAG 91736

AGATCGGAAGAGCACACGTCTGAACTCCAGT 90100

AGATCGGAAGAGCACACGTCTGAACTCCAGTC 89135

AGATCGGAAGAGCACACGTCTGAACTCCAGTCA 87509

AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC 84109

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACG 82812

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGT 79687

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTG 77907

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGT 77414

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGTC 75269

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGTCT 73414

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGTCTG 72394

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGTCTGA 69875

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGTCTGAA 66649

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGTCTGAAT 64955

AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGTCTGAATC 62111

other adapter sequences 1587040

Adapter or bad ligation of read2

Sequence Occurrences

A 108791

AG 109785

AGA 109374

AGAT 109315

AGATC 110084

AGATCG 110174

AGATCGG 109559

AGATCGGA 111441

AGATCGGAA 110156

AGATCGGAAG 109904

AGATCGGAAGA 110587

AGATCGGAAGAG 109490

AGATCGGAAGAGC 109373

AGATCGGAAGAGCG 109411

AGATCGGAAGAGCGT 108227

AGATCGGAAGAGCGTC 106661

AGATCGGAAGAGCGTCG 107063

AGATCGGAAGAGCGTCGT 106108

AGATCGGAAGAGCGTCGTG 105439

AGATCGGAAGAGCGTCGTGT 103731

AGATCGGAAGAGCGTCGTGTA 101966

AGATCGGAAGAGCGTCGTGTAG 101208

AGATCGGAAGAGCGTCGTGTAGG 99978

AGATCGGAAGAGCGTCGTGTAGGG 98708

AGATCGGAAGAGCGTCGTGTAGGGA 97941

AGATCGGAAGAGCGTCGTGTAGGGAA 96334

AGATCGGAAGAGCGTCGTGTAGGGAAA 94294

AGATCGGAAGAGCGTCGTGTAGGGAAAG 93317

AGATCGGAAGAGCGTCGTGTAGGGAAAGA 92875

AGATCGGAAGAGCGTCGTGTAGGGAAAGAG 90956

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGT 88896

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTG 88143

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT 86040

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA 82635

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAT 81114

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATA 77953

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATAG 76096

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATAGT 75856

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATAGTC 73945

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATAGTCG 71860

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATAGTCGG 70825

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATAGTCGGG 68278

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATAGTCGGGT 65249

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATAGTCGGGTG 63514

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATAGTCGGGTGT 60963

AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATAGTCGGGTGTA 58653

other adapter sequences 1532287

Insert size estimation

This estimation is based on paired-end overlap analysis, and there are 33.327771% reads found not overlapped.
The nonoverlapped read pairs may have insert size <30 or >270, or contain too much sequencing errors to be detected as overlapped.

Before filtering

Before filtering: read1: quality

Value of each position will be shown on mouse over.

Before filtering: read1: base contents

Value of each position will be shown on mouse over.

Before filtering: read1: KMER counting

Darker background means larger counts. The count will be shown on mouse over.

AA AT AC AG TA TT TC TG CA CT CC CG GA GT GC GG

AAA AAAAA AAAAT AAAAC AAAAG AAATA AAATT AAATC AAATG AAACA AAACT AAACC AAACG AAAGA AAAGT AAAGC AAAGG

AAT AATAA AATAT AATAC AATAG AATTA AATTT AATTC AATTG AATCA AATCT AATCC AATCG AATGA AATGT AATGC AATGG

AAC AACAA AACAT AACAC AACAG AACTA AACTT AACTC AACTG AACCA AACCT AACCC AACCG AACGA AACGT AACGC AACGG

AAG AAGAA AAGAT AAGAC AAGAG AAGTA AAGTT AAGTC AAGTG AAGCA AAGCT AAGCC AAGCG AAGGA AAGGT AAGGC AAGGG

ATA ATAAA ATAAT ATAAC ATAAG ATATA ATATT ATATC ATATG ATACA ATACT ATACC ATACG ATAGA ATAGT ATAGC ATAGG

ATT ATTAA ATTAT ATTAC ATTAG ATTTA ATTTT ATTTC ATTTG ATTCA ATTCT ATTCC ATTCG ATTGA ATTGT ATTGC ATTGG

ATC ATCAA ATCAT ATCAC ATCAG ATCTA ATCTT ATCTC ATCTG ATCCA ATCCT ATCCC ATCCG ATCGA ATCGT ATCGC ATCGG

ATG ATGAA ATGAT ATGAC ATGAG ATGTA ATGTT ATGTC ATGTG ATGCA ATGCT ATGCC ATGCG ATGGA ATGGT ATGGC ATGGG

ACA ACAAA ACAAT ACAAC ACAAG ACATA ACATT ACATC ACATG ACACA ACACT ACACC ACACG ACAGA ACAGT ACAGC ACAGG

ACT ACTAA ACTAT ACTAC ACTAG ACTTA ACTTT ACTTC ACTTG ACTCA ACTCT ACTCC ACTCG ACTGA ACTGT ACTGC ACTGG

ACC ACCAA ACCAT ACCAC ACCAG ACCTA ACCTT ACCTC ACCTG ACCCA ACCCT ACCCC ACCCG ACCGA ACCGT ACCGC ACCGG

ACG ACGAA ACGAT ACGAC ACGAG ACGTA ACGTT ACGTC ACGTG ACGCA ACGCT ACGCC ACGCG ACGGA ACGGT ACGGC ACGGG

AGA AGAAA AGAAT AGAAC AGAAG AGATA AGATT AGATC AGATG AGACA AGACT AGACC AGACG AGAGA AGAGT AGAGC AGAGG

AGT AGTAA AGTAT AGTAC AGTAG AGTTA AGTTT AGTTC AGTTG AGTCA AGTCT AGTCC AGTCG AGTGA AGTGT AGTGC AGTGG

AGC AGCAA AGCAT AGCAC AGCAG AGCTA AGCTT AGCTC AGCTG AGCCA AGCCT AGCCC AGCCG AGCGA AGCGT AGCGC AGCGG

AGG AGGAA AGGAT AGGAC AGGAG AGGTA AGGTT AGGTC AGGTG AGGCA AGGCT AGGCC AGGCG AGGGA AGGGT AGGGC AGGGG

TAA TAAAA TAAAT TAAAC TAAAG TAATA TAATT TAATC TAATG TAACA TAACT TAACC TAACG TAAGA TAAGT TAAGC TAAGG

TAT TATAA TATAT TATAC TATAG TATTA TATTT TATTC TATTG TATCA TATCT TATCC TATCG TATGA TATGT TATGC TATGG

TAC TACAA TACAT TACAC TACAG TACTA TACTT TACTC TACTG TACCA TACCT TACCC TACCG TACGA TACGT TACGC TACGG

TAG TAGAA TAGAT TAGAC TAGAG TAGTA TAGTT TAGTC TAGTG TAGCA TAGCT TAGCC TAGCG TAGGA TAGGT TAGGC TAGGG

TTA TTAAA TTAAT TTAAC TTAAG TTATA TTATT TTATC TTATG TTACA TTACT TTACC TTACG TTAGA TTAGT TTAGC TTAGG

TTT TTTAA TTTAT TTTAC TTTAG TTTTA TTTTT TTTTC TTTTG TTTCA TTTCT TTTCC TTTCG TTTGA TTTGT TTTGC TTTGG

TTC TTCAA TTCAT TTCAC TTCAG TTCTA TTCTT TTCTC TTCTG TTCCA TTCCT TTCCC TTCCG TTCGA TTCGT TTCGC TTCGG

TTG TTGAA TTGAT TTGAC TTGAG TTGTA TTGTT TTGTC TTGTG TTGCA TTGCT TTGCC TTGCG TTGGA TTGGT TTGGC TTGGG

TCA TCAAA TCAAT TCAAC TCAAG TCATA TCATT TCATC TCATG TCACA TCACT TCACC TCACG TCAGA TCAGT TCAGC TCAGG

TCT TCTAA TCTAT TCTAC TCTAG TCTTA TCTTT TCTTC TCTTG TCTCA TCTCT TCTCC TCTCG TCTGA TCTGT TCTGC TCTGG

TCC TCCAA TCCAT TCCAC TCCAG TCCTA TCCTT TCCTC TCCTG TCCCA TCCCT TCCCC TCCCG TCCGA TCCGT TCCGC TCCGG

TCG TCGAA TCGAT TCGAC TCGAG TCGTA TCGTT TCGTC TCGTG TCGCA TCGCT TCGCC TCGCG TCGGA TCGGT TCGGC TCGGG

TGA TGAAA TGAAT TGAAC TGAAG TGATA TGATT TGATC TGATG TGACA TGACT TGACC TGACG TGAGA TGAGT TGAGC TGAGG

TGT TGTAA TGTAT TGTAC TGTAG TGTTA TGTTT TGTTC TGTTG TGTCA TGTCT TGTCC TGTCG TGTGA TGTGT TGTGC TGTGG

TGC TGCAA TGCAT TGCAC TGCAG TGCTA TGCTT TGCTC TGCTG TGCCA TGCCT TGCCC TGCCG TGCGA TGCGT TGCGC TGCGG

TGG TGGAA TGGAT TGGAC TGGAG TGGTA TGGTT TGGTC TGGTG TGGCA TGGCT TGGCC TGGCG TGGGA TGGGT TGGGC TGGGG

CAA CAAAA CAAAT CAAAC CAAAG CAATA CAATT CAATC CAATG CAACA CAACT CAACC CAACG CAAGA CAAGT CAAGC CAAGG

CAT CATAA CATAT CATAC CATAG CATTA CATTT CATTC CATTG CATCA CATCT CATCC CATCG CATGA CATGT CATGC CATGG

CAC CACAA CACAT CACAC CACAG CACTA CACTT CACTC CACTG CACCA CACCT CACCC CACCG CACGA CACGT CACGC CACGG

CAG CAGAA CAGAT CAGAC CAGAG CAGTA CAGTT CAGTC CAGTG CAGCA CAGCT CAGCC CAGCG CAGGA CAGGT CAGGC CAGGG

CTA CTAAA CTAAT CTAAC CTAAG CTATA CTATT CTATC CTATG CTACA CTACT CTACC CTACG CTAGA CTAGT CTAGC CTAGG

CTT CTTAA CTTAT CTTAC CTTAG CTTTA CTTTT CTTTC CTTTG CTTCA CTTCT CTTCC CTTCG CTTGA CTTGT CTTGC CTTGG

CTC CTCAA CTCAT CTCAC CTCAG CTCTA CTCTT CTCTC CTCTG CTCCA CTCCT CTCCC CTCCG CTCGA CTCGT CTCGC CTCGG

CTG CTGAA CTGAT CTGAC CTGAG CTGTA CTGTT CTGTC CTGTG CTGCA CTGCT CTGCC CTGCG CTGGA CTGGT CTGGC CTGGG

CCA CCAAA CCAAT CCAAC CCAAG CCATA CCATT CCATC CCATG CCACA CCACT CCACC CCACG CCAGA CCAGT CCAGC CCAGG

CCT CCTAA CCTAT CCTAC CCTAG CCTTA CCTTT CCTTC CCTTG CCTCA CCTCT CCTCC CCTCG CCTGA CCTGT CCTGC CCTGG

CCC CCCAA CCCAT CCCAC CCCAG CCCTA CCCTT CCCTC CCCTG CCCCA CCCCT CCCCC CCCCG CCCGA CCCGT CCCGC CCCGG

CCG CCGAA CCGAT CCGAC CCGAG CCGTA CCGTT CCGTC CCGTG CCGCA CCGCT CCGCC CCGCG CCGGA CCGGT CCGGC CCGGG

CGA CGAAA CGAAT CGAAC CGAAG CGATA CGATT CGATC CGATG CGACA CGACT CGACC CGACG CGAGA CGAGT CGAGC CGAGG

CGT CGTAA CGTAT CGTAC CGTAG CGTTA CGTTT CGTTC CGTTG CGTCA CGTCT CGTCC CGTCG CGTGA CGTGT CGTGC CGTGG

CGC CGCAA CGCAT CGCAC CGCAG CGCTA CGCTT CGCTC CGCTG CGCCA CGCCT CGCCC CGCCG CGCGA CGCGT CGCGC CGCGG

CGG CGGAA CGGAT CGGAC CGGAG CGGTA CGGTT CGGTC CGGTG CGGCA CGGCT CGGCC CGGCG CGGGA CGGGT CGGGC CGGGG

GAA GAAAA GAAAT GAAAC GAAAG GAATA GAATT GAATC GAATG GAACA GAACT GAACC GAACG GAAGA GAAGT GAAGC GAAGG

GAT GATAA GATAT GATAC GATAG GATTA GATTT GATTC GATTG GATCA GATCT GATCC GATCG GATGA GATGT GATGC GATGG

GAC GACAA GACAT GACAC GACAG GACTA GACTT GACTC GACTG GACCA GACCT GACCC GACCG GACGA GACGT GACGC GACGG

GAG GAGAA GAGAT GAGAC GAGAG GAGTA GAGTT GAGTC GAGTG GAGCA GAGCT GAGCC GAGCG GAGGA GAGGT GAGGC GAGGG

GTA GTAAA GTAAT GTAAC GTAAG GTATA GTATT GTATC GTATG GTACA GTACT GTACC GTACG GTAGA GTAGT GTAGC GTAGG

GTT GTTAA GTTAT GTTAC GTTAG GTTTA GTTTT GTTTC GTTTG GTTCA GTTCT GTTCC GTTCG GTTGA GTTGT GTTGC GTTGG

GTC GTCAA GTCAT GTCAC GTCAG GTCTA GTCTT GTCTC GTCTG GTCCA GTCCT GTCCC GTCCG GTCGA GTCGT GTCGC GTCGG

GTG GTGAA GTGAT GTGAC GTGAG GTGTA GTGTT GTGTC GTGTG GTGCA GTGCT GTGCC GTGCG GTGGA GTGGT GTGGC GTGGG

GCA GCAAA GCAAT GCAAC GCAAG GCATA GCATT GCATC GCATG GCACA GCACT GCACC GCACG GCAGA GCAGT GCAGC GCAGG

GCT GCTAA GCTAT GCTAC GCTAG GCTTA GCTTT GCTTC GCTTG GCTCA GCTCT GCTCC GCTCG GCTGA GCTGT GCTGC GCTGG

GCC GCCAA GCCAT GCCAC GCCAG GCCTA GCCTT GCCTC GCCTG GCCCA GCCCT GCCCC GCCCG GCCGA GCCGT GCCGC GCCGG

GCG GCGAA GCGAT GCGAC GCGAG GCGTA GCGTT GCGTC GCGTG GCGCA GCGCT GCGCC GCGCG GCGGA GCGGT GCGGC GCGGG

GGA GGAAA GGAAT GGAAC GGAAG GGATA GGATT GGATC GGATG GGACA GGACT GGACC GGACG GGAGA GGAGT GGAGC GGAGG

GGT GGTAA GGTAT GGTAC GGTAG GGTTA GGTTT GGTTC GGTTG GGTCA GGTCT GGTCC GGTCG GGTGA GGTGT GGTGC GGTGG

GGC GGCAA GGCAT GGCAC GGCAG GGCTA GGCTT GGCTC GGCTG GGCCA GGCCT GGCCC GGCCG GGCGA GGCGT GGCGC GGCGG

GGG GGGAA GGGAT GGGAC GGGAG GGGTA GGGTT GGGTC GGGTG GGGCA GGGCT GGGCC GGGCG GGGGA GGGGT GGGGC GGGGG

Before filtering: read2: quality

Value of each position will be shown on mouse over.

Before filtering: read2: base contents

Value of each position will be shown on mouse over.

Before filtering: read2: KMER counting

Darker background means larger counts. The count will be shown on mouse over.

AA AT AC AG TA TT TC TG CA CT CC CG GA GT GC GG

AAA AAAAA AAAAT AAAAC AAAAG AAATA AAATT AAATC AAATG AAACA AAACT AAACC AAACG AAAGA AAAGT AAAGC AAAGG

AAT AATAA AATAT AATAC AATAG AATTA AATTT AATTC AATTG AATCA AATCT AATCC AATCG AATGA AATGT AATGC AATGG

AAC AACAA AACAT AACAC AACAG AACTA AACTT AACTC AACTG AACCA AACCT AACCC AACCG AACGA AACGT AACGC AACGG

AAG AAGAA AAGAT AAGAC AAGAG AAGTA AAGTT AAGTC AAGTG AAGCA AAGCT AAGCC AAGCG AAGGA AAGGT AAGGC AAGGG

ATA ATAAA ATAAT ATAAC ATAAG ATATA ATATT ATATC ATATG ATACA ATACT ATACC ATACG ATAGA ATAGT ATAGC ATAGG

ATT ATTAA ATTAT ATTAC ATTAG ATTTA ATTTT ATTTC ATTTG ATTCA ATTCT ATTCC ATTCG ATTGA ATTGT ATTGC ATTGG

ATC ATCAA ATCAT ATCAC ATCAG ATCTA ATCTT ATCTC ATCTG ATCCA ATCCT ATCCC ATCCG ATCGA ATCGT ATCGC ATCGG

ATG ATGAA ATGAT ATGAC ATGAG ATGTA ATGTT ATGTC ATGTG ATGCA ATGCT ATGCC ATGCG ATGGA ATGGT ATGGC ATGGG

ACA ACAAA ACAAT ACAAC ACAAG ACATA ACATT ACATC ACATG ACACA ACACT ACACC ACACG ACAGA ACAGT ACAGC ACAGG

ACT ACTAA ACTAT ACTAC ACTAG ACTTA ACTTT ACTTC ACTTG ACTCA ACTCT ACTCC ACTCG ACTGA ACTGT ACTGC ACTGG

ACC ACCAA ACCAT ACCAC ACCAG ACCTA ACCTT ACCTC ACCTG ACCCA ACCCT ACCCC ACCCG ACCGA ACCGT ACCGC ACCGG

ACG ACGAA ACGAT ACGAC ACGAG ACGTA ACGTT ACGTC ACGTG ACGCA ACGCT ACGCC ACGCG ACGGA ACGGT ACGGC ACGGG

AGA AGAAA AGAAT AGAAC AGAAG AGATA AGATT AGATC AGATG AGACA AGACT AGACC AGACG AGAGA AGAGT AGAGC AGAGG

AGT AGTAA AGTAT AGTAC AGTAG AGTTA AGTTT AGTTC AGTTG AGTCA AGTCT AGTCC AGTCG AGTGA AGTGT AGTGC AGTGG

AGC AGCAA AGCAT AGCAC AGCAG AGCTA AGCTT AGCTC AGCTG AGCCA AGCCT AGCCC AGCCG AGCGA AGCGT AGCGC AGCGG

AGG AGGAA AGGAT AGGAC AGGAG AGGTA AGGTT AGGTC AGGTG AGGCA AGGCT AGGCC AGGCG AGGGA AGGGT AGGGC AGGGG

TAA TAAAA TAAAT TAAAC TAAAG TAATA TAATT TAATC TAATG TAACA TAACT TAACC TAACG TAAGA TAAGT TAAGC TAAGG

TAT TATAA TATAT TATAC TATAG TATTA TATTT TATTC TATTG TATCA TATCT TATCC TATCG TATGA TATGT TATGC TATGG

TAC TACAA TACAT TACAC TACAG TACTA TACTT TACTC TACTG TACCA TACCT TACCC TACCG TACGA TACGT TACGC TACGG

TAG TAGAA TAGAT TAGAC TAGAG TAGTA TAGTT TAGTC TAGTG TAGCA TAGCT TAGCC TAGCG TAGGA TAGGT TAGGC TAGGG

TTA TTAAA TTAAT TTAAC TTAAG TTATA TTATT TTATC TTATG TTACA TTACT TTACC TTACG TTAGA TTAGT TTAGC TTAGG

TTT TTTAA TTTAT TTTAC TTTAG TTTTA TTTTT TTTTC TTTTG TTTCA TTTCT TTTCC TTTCG TTTGA TTTGT TTTGC TTTGG

TTC TTCAA TTCAT TTCAC TTCAG TTCTA TTCTT TTCTC TTCTG TTCCA TTCCT TTCCC TTCCG TTCGA TTCGT TTCGC TTCGG

TTG TTGAA TTGAT TTGAC TTGAG TTGTA TTGTT TTGTC TTGTG TTGCA TTGCT TTGCC TTGCG TTGGA TTGGT TTGGC TTGGG

TCA TCAAA TCAAT TCAAC TCAAG TCATA TCATT TCATC TCATG TCACA TCACT TCACC TCACG TCAGA TCAGT TCAGC TCAGG

TCT TCTAA TCTAT TCTAC TCTAG TCTTA TCTTT TCTTC TCTTG TCTCA TCTCT TCTCC TCTCG TCTGA TCTGT TCTGC TCTGG

TCC TCCAA TCCAT TCCAC TCCAG TCCTA TCCTT TCCTC TCCTG TCCCA TCCCT TCCCC TCCCG TCCGA TCCGT TCCGC TCCGG

TCG TCGAA TCGAT TCGAC TCGAG TCGTA TCGTT TCGTC TCGTG TCGCA TCGCT TCGCC TCGCG TCGGA TCGGT TCGGC TCGGG

TGA TGAAA TGAAT TGAAC TGAAG TGATA TGATT TGATC TGATG TGACA TGACT TGACC TGACG TGAGA TGAGT TGAGC TGAGG

TGT TGTAA TGTAT TGTAC TGTAG TGTTA TGTTT TGTTC TGTTG TGTCA TGTCT TGTCC TGTCG TGTGA TGTGT TGTGC TGTGG

TGC TGCAA TGCAT TGCAC TGCAG TGCTA TGCTT TGCTC TGCTG TGCCA TGCCT TGCCC TGCCG TGCGA TGCGT TGCGC TGCGG

TGG TGGAA TGGAT TGGAC TGGAG TGGTA TGGTT TGGTC TGGTG TGGCA TGGCT TGGCC TGGCG TGGGA TGGGT TGGGC TGGGG

CAA CAAAA CAAAT CAAAC CAAAG CAATA CAATT CAATC CAATG CAACA CAACT CAACC CAACG CAAGA CAAGT CAAGC CAAGG

CAT CATAA CATAT CATAC CATAG CATTA CATTT CATTC CATTG CATCA CATCT CATCC CATCG CATGA CATGT CATGC CATGG

CAC CACAA CACAT CACAC CACAG CACTA CACTT CACTC CACTG CACCA CACCT CACCC CACCG CACGA CACGT CACGC CACGG

CAG CAGAA CAGAT CAGAC CAGAG CAGTA CAGTT CAGTC CAGTG CAGCA CAGCT CAGCC CAGCG CAGGA CAGGT CAGGC CAGGG

CTA CTAAA CTAAT CTAAC CTAAG CTATA CTATT CTATC CTATG CTACA CTACT CTACC CTACG CTAGA CTAGT CTAGC CTAGG

CTT CTTAA CTTAT CTTAC CTTAG CTTTA CTTTT CTTTC CTTTG CTTCA CTTCT CTTCC CTTCG CTTGA CTTGT CTTGC CTTGG

CTC CTCAA CTCAT CTCAC CTCAG CTCTA CTCTT CTCTC CTCTG CTCCA CTCCT CTCCC CTCCG CTCGA CTCGT CTCGC CTCGG

CTG CTGAA CTGAT CTGAC CTGAG CTGTA CTGTT CTGTC CTGTG CTGCA CTGCT CTGCC CTGCG CTGGA CTGGT CTGGC CTGGG

CCA CCAAA CCAAT CCAAC CCAAG CCATA CCATT CCATC CCATG CCACA CCACT CCACC CCACG CCAGA CCAGT CCAGC CCAGG

CCT CCTAA CCTAT CCTAC CCTAG CCTTA CCTTT CCTTC CCTTG CCTCA CCTCT CCTCC CCTCG CCTGA CCTGT CCTGC CCTGG

CCC CCCAA CCCAT CCCAC CCCAG CCCTA CCCTT CCCTC CCCTG CCCCA CCCCT CCCCC CCCCG CCCGA CCCGT CCCGC CCCGG

CCG CCGAA CCGAT CCGAC CCGAG CCGTA CCGTT CCGTC CCGTG CCGCA CCGCT CCGCC CCGCG CCGGA CCGGT CCGGC CCGGG

CGA CGAAA CGAAT CGAAC CGAAG CGATA CGATT CGATC CGATG CGACA CGACT CGACC CGACG CGAGA CGAGT CGAGC CGAGG

CGT CGTAA CGTAT CGTAC CGTAG CGTTA CGTTT CGTTC CGTTG CGTCA CGTCT CGTCC CGTCG CGTGA CGTGT CGTGC CGTGG

CGC CGCAA CGCAT CGCAC CGCAG CGCTA CGCTT CGCTC CGCTG CGCCA CGCCT CGCCC CGCCG CGCGA CGCGT CGCGC CGCGG

CGG CGGAA CGGAT CGGAC CGGAG CGGTA CGGTT CGGTC CGGTG CGGCA CGGCT CGGCC CGGCG CGGGA CGGGT CGGGC CGGGG

GAA GAAAA GAAAT GAAAC GAAAG GAATA GAATT GAATC GAATG GAACA GAACT GAACC GAACG GAAGA GAAGT GAAGC GAAGG

GAT GATAA GATAT GATAC GATAG GATTA GATTT GATTC GATTG GATCA GATCT GATCC GATCG GATGA GATGT GATGC GATGG

GAC GACAA GACAT GACAC GACAG GACTA GACTT GACTC GACTG GACCA GACCT GACCC GACCG GACGA GACGT GACGC GACGG

GAG GAGAA GAGAT GAGAC GAGAG GAGTA GAGTT GAGTC GAGTG GAGCA GAGCT GAGCC GAGCG GAGGA GAGGT GAGGC GAGGG

GTA GTAAA GTAAT GTAAC GTAAG GTATA GTATT GTATC GTATG GTACA GTACT GTACC GTACG GTAGA GTAGT GTAGC GTAGG

GTT GTTAA GTTAT GTTAC GTTAG GTTTA GTTTT GTTTC GTTTG GTTCA GTTCT GTTCC GTTCG GTTGA GTTGT GTTGC GTTGG

GTC GTCAA GTCAT GTCAC GTCAG GTCTA GTCTT GTCTC GTCTG GTCCA GTCCT GTCCC GTCCG GTCGA GTCGT GTCGC GTCGG

GTG GTGAA GTGAT GTGAC GTGAG GTGTA GTGTT GTGTC GTGTG GTGCA GTGCT GTGCC GTGCG GTGGA GTGGT GTGGC GTGGG

GCA GCAAA GCAAT GCAAC GCAAG GCATA GCATT GCATC GCATG GCACA GCACT GCACC GCACG GCAGA GCAGT GCAGC GCAGG

GCT GCTAA GCTAT GCTAC GCTAG GCTTA GCTTT GCTTC GCTTG GCTCA GCTCT GCTCC GCTCG GCTGA GCTGT GCTGC GCTGG

GCC GCCAA GCCAT GCCAC GCCAG GCCTA GCCTT GCCTC GCCTG GCCCA GCCCT GCCCC GCCCG GCCGA GCCGT GCCGC GCCGG

GCG GCGAA GCGAT GCGAC GCGAG GCGTA GCGTT GCGTC GCGTG GCGCA GCGCT GCGCC GCGCG GCGGA GCGGT GCGGC GCGGG

GGA GGAAA GGAAT GGAAC GGAAG GGATA GGATT GGATC GGATG GGACA GGACT GGACC GGACG GGAGA GGAGT GGAGC GGAGG

GGT GGTAA GGTAT GGTAC GGTAG GGTTA GGTTT GGTTC GGTTG GGTCA GGTCT GGTCC GGTCG GGTGA GGTGT GGTGC GGTGG

GGC GGCAA GGCAT GGCAC GGCAG GGCTA GGCTT GGCTC GGCTG GGCCA GGCCT GGCCC GGCCG GGCGA GGCGT GGCGC GGCGG

GGG GGGAA GGGAT GGGAC GGGAG GGGTA GGGTT GGGTC GGGTG GGGCA GGGCT GGGCC GGGCG GGGGA GGGGT GGGGC GGGGG

After filtering

After filtering: merged: quality

Value of each position will be shown on mouse over.

After filtering: merged: base contents

Value of each position will be shown on mouse over.

After filtering: merged: KMER counting

Darker background means larger counts. The count will be shown on mouse over.

AA AT AC AG TA TT TC TG CA CT CC CG GA GT GC GG

AAA AAAAA AAAAT AAAAC AAAAG AAATA AAATT AAATC AAATG AAACA AAACT AAACC AAACG AAAGA AAAGT AAAGC AAAGG

AAT AATAA AATAT AATAC AATAG AATTA AATTT AATTC AATTG AATCA AATCT AATCC AATCG AATGA AATGT AATGC AATGG

AAC AACAA AACAT AACAC AACAG AACTA AACTT AACTC AACTG AACCA AACCT AACCC AACCG AACGA AACGT AACGC AACGG

AAG AAGAA AAGAT AAGAC AAGAG AAGTA AAGTT AAGTC AAGTG AAGCA AAGCT AAGCC AAGCG AAGGA AAGGT AAGGC AAGGG

ATA ATAAA ATAAT ATAAC ATAAG ATATA ATATT ATATC ATATG ATACA ATACT ATACC ATACG ATAGA ATAGT ATAGC ATAGG

ATT ATTAA ATTAT ATTAC ATTAG ATTTA ATTTT ATTTC ATTTG ATTCA ATTCT ATTCC ATTCG ATTGA ATTGT ATTGC ATTGG

ATC ATCAA ATCAT ATCAC ATCAG ATCTA ATCTT ATCTC ATCTG ATCCA ATCCT ATCCC ATCCG ATCGA ATCGT ATCGC ATCGG

ATG ATGAA ATGAT ATGAC ATGAG ATGTA ATGTT ATGTC ATGTG ATGCA ATGCT ATGCC ATGCG ATGGA ATGGT ATGGC ATGGG

ACA ACAAA ACAAT ACAAC ACAAG ACATA ACATT ACATC ACATG ACACA ACACT ACACC ACACG ACAGA ACAGT ACAGC ACAGG

ACT ACTAA ACTAT ACTAC ACTAG ACTTA ACTTT ACTTC ACTTG ACTCA ACTCT ACTCC ACTCG ACTGA ACTGT ACTGC ACTGG

ACC ACCAA ACCAT ACCAC ACCAG ACCTA ACCTT ACCTC ACCTG ACCCA ACCCT ACCCC ACCCG ACCGA ACCGT ACCGC ACCGG

ACG ACGAA ACGAT ACGAC ACGAG ACGTA ACGTT ACGTC ACGTG ACGCA ACGCT ACGCC ACGCG ACGGA ACGGT ACGGC ACGGG

AGA AGAAA AGAAT AGAAC AGAAG AGATA AGATT AGATC AGATG AGACA AGACT AGACC AGACG AGAGA AGAGT AGAGC AGAGG

AGT AGTAA AGTAT AGTAC AGTAG AGTTA AGTTT AGTTC AGTTG AGTCA AGTCT AGTCC AGTCG AGTGA AGTGT AGTGC AGTGG

AGC AGCAA AGCAT AGCAC AGCAG AGCTA AGCTT AGCTC AGCTG AGCCA AGCCT AGCCC AGCCG AGCGA AGCGT AGCGC AGCGG

AGG AGGAA AGGAT AGGAC AGGAG AGGTA AGGTT AGGTC AGGTG AGGCA AGGCT AGGCC AGGCG AGGGA AGGGT AGGGC AGGGG

TAA TAAAA TAAAT TAAAC TAAAG TAATA TAATT TAATC TAATG TAACA TAACT TAACC TAACG TAAGA TAAGT TAAGC TAAGG

TAT TATAA TATAT TATAC TATAG TATTA TATTT TATTC TATTG TATCA TATCT TATCC TATCG TATGA TATGT TATGC TATGG

TAC TACAA TACAT TACAC TACAG TACTA TACTT TACTC TACTG TACCA TACCT TACCC TACCG TACGA TACGT TACGC TACGG

TAG TAGAA TAGAT TAGAC TAGAG TAGTA TAGTT TAGTC TAGTG TAGCA TAGCT TAGCC TAGCG TAGGA TAGGT TAGGC TAGGG

TTA TTAAA TTAAT TTAAC TTAAG TTATA TTATT TTATC TTATG TTACA TTACT TTACC TTACG TTAGA TTAGT TTAGC TTAGG

TTT TTTAA TTTAT TTTAC TTTAG TTTTA TTTTT TTTTC TTTTG TTTCA TTTCT TTTCC TTTCG TTTGA TTTGT TTTGC TTTGG

TTC TTCAA TTCAT TTCAC TTCAG TTCTA TTCTT TTCTC TTCTG TTCCA TTCCT TTCCC TTCCG TTCGA TTCGT TTCGC TTCGG

TTG TTGAA TTGAT TTGAC TTGAG TTGTA TTGTT TTGTC TTGTG TTGCA TTGCT TTGCC TTGCG TTGGA TTGGT TTGGC TTGGG

TCA TCAAA TCAAT TCAAC TCAAG TCATA TCATT TCATC TCATG TCACA TCACT TCACC TCACG TCAGA TCAGT TCAGC TCAGG

TCT TCTAA TCTAT TCTAC TCTAG TCTTA TCTTT TCTTC TCTTG TCTCA TCTCT TCTCC TCTCG TCTGA TCTGT TCTGC TCTGG

TCC TCCAA TCCAT TCCAC TCCAG TCCTA TCCTT TCCTC TCCTG TCCCA TCCCT TCCCC TCCCG TCCGA TCCGT TCCGC TCCGG

TCG TCGAA TCGAT TCGAC TCGAG TCGTA TCGTT TCGTC TCGTG TCGCA TCGCT TCGCC TCGCG TCGGA TCGGT TCGGC TCGGG

TGA TGAAA TGAAT TGAAC TGAAG TGATA TGATT TGATC TGATG TGACA TGACT TGACC TGACG TGAGA TGAGT TGAGC TGAGG

TGT TGTAA TGTAT TGTAC TGTAG TGTTA TGTTT TGTTC TGTTG TGTCA TGTCT TGTCC TGTCG TGTGA TGTGT TGTGC TGTGG

TGC TGCAA TGCAT TGCAC TGCAG TGCTA TGCTT TGCTC TGCTG TGCCA TGCCT TGCCC TGCCG TGCGA TGCGT TGCGC TGCGG

TGG TGGAA TGGAT TGGAC TGGAG TGGTA TGGTT TGGTC TGGTG TGGCA TGGCT TGGCC TGGCG TGGGA TGGGT TGGGC TGGGG

CAA CAAAA CAAAT CAAAC CAAAG CAATA CAATT CAATC CAATG CAACA CAACT CAACC CAACG CAAGA CAAGT CAAGC CAAGG

CAT CATAA CATAT CATAC CATAG CATTA CATTT CATTC CATTG CATCA CATCT CATCC CATCG CATGA CATGT CATGC CATGG

CAC CACAA CACAT CACAC CACAG CACTA CACTT CACTC CACTG CACCA CACCT CACCC CACCG CACGA CACGT CACGC CACGG

CAG CAGAA CAGAT CAGAC CAGAG CAGTA CAGTT CAGTC CAGTG CAGCA CAGCT CAGCC CAGCG CAGGA CAGGT CAGGC CAGGG

CTA CTAAA CTAAT CTAAC CTAAG CTATA CTATT CTATC CTATG CTACA CTACT CTACC CTACG CTAGA CTAGT CTAGC CTAGG

CTT CTTAA CTTAT CTTAC CTTAG CTTTA CTTTT CTTTC CTTTG CTTCA CTTCT CTTCC CTTCG CTTGA CTTGT CTTGC CTTGG

CTC CTCAA CTCAT CTCAC CTCAG CTCTA CTCTT CTCTC CTCTG CTCCA CTCCT CTCCC CTCCG CTCGA CTCGT CTCGC CTCGG

CTG CTGAA CTGAT CTGAC CTGAG CTGTA CTGTT CTGTC CTGTG CTGCA CTGCT CTGCC CTGCG CTGGA CTGGT CTGGC CTGGG

CCA CCAAA CCAAT CCAAC CCAAG CCATA CCATT CCATC CCATG CCACA CCACT CCACC CCACG CCAGA CCAGT CCAGC CCAGG

CCT CCTAA CCTAT CCTAC CCTAG CCTTA CCTTT CCTTC CCTTG CCTCA CCTCT CCTCC CCTCG CCTGA CCTGT CCTGC CCTGG

CCC CCCAA CCCAT CCCAC CCCAG CCCTA CCCTT CCCTC CCCTG CCCCA CCCCT CCCCC CCCCG CCCGA CCCGT CCCGC CCCGG

CCG CCGAA CCGAT CCGAC CCGAG CCGTA CCGTT CCGTC CCGTG CCGCA CCGCT CCGCC CCGCG CCGGA CCGGT CCGGC CCGGG

CGA CGAAA CGAAT CGAAC CGAAG CGATA CGATT CGATC CGATG CGACA CGACT CGACC CGACG CGAGA CGAGT CGAGC CGAGG

CGT CGTAA CGTAT CGTAC CGTAG CGTTA CGTTT CGTTC CGTTG CGTCA CGTCT CGTCC CGTCG CGTGA CGTGT CGTGC CGTGG

CGC CGCAA CGCAT CGCAC CGCAG CGCTA CGCTT CGCTC CGCTG CGCCA CGCCT CGCCC CGCCG CGCGA CGCGT CGCGC CGCGG

CGG CGGAA CGGAT CGGAC CGGAG CGGTA CGGTT CGGTC CGGTG CGGCA CGGCT CGGCC CGGCG CGGGA CGGGT CGGGC CGGGG

GAA GAAAA GAAAT GAAAC GAAAG GAATA GAATT GAATC GAATG GAACA GAACT GAACC GAACG GAAGA GAAGT GAAGC GAAGG

GAT GATAA GATAT GATAC GATAG GATTA GATTT GATTC GATTG GATCA GATCT GATCC GATCG GATGA GATGT GATGC GATGG

GAC GACAA GACAT GACAC GACAG GACTA GACTT GACTC GACTG GACCA GACCT GACCC GACCG GACGA GACGT GACGC GACGG

GAG GAGAA GAGAT GAGAC GAGAG GAGTA GAGTT GAGTC GAGTG GAGCA GAGCT GAGCC GAGCG GAGGA GAGGT GAGGC GAGGG

GTA GTAAA GTAAT GTAAC GTAAG GTATA GTATT GTATC GTATG GTACA GTACT GTACC GTACG GTAGA GTAGT GTAGC GTAGG

GTT GTTAA GTTAT GTTAC GTTAG GTTTA GTTTT GTTTC GTTTG GTTCA GTTCT GTTCC GTTCG GTTGA GTTGT GTTGC GTTGG

GTC GTCAA GTCAT GTCAC GTCAG GTCTA GTCTT GTCTC GTCTG GTCCA GTCCT GTCCC GTCCG GTCGA GTCGT GTCGC GTCGG

GTG GTGAA GTGAT GTGAC GTGAG GTGTA GTGTT GTGTC GTGTG GTGCA GTGCT GTGCC GTGCG GTGGA GTGGT GTGGC GTGGG

GCA GCAAA GCAAT GCAAC GCAAG GCATA GCATT GCATC GCATG GCACA GCACT GCACC GCACG GCAGA GCAGT GCAGC GCAGG

GCT GCTAA GCTAT GCTAC GCTAG GCTTA GCTTT GCTTC GCTTG GCTCA GCTCT GCTCC GCTCG GCTGA GCTGT GCTGC GCTGG

GCC GCCAA GCCAT GCCAC GCCAG GCCTA GCCTT GCCTC GCCTG GCCCA GCCCT GCCCC GCCCG GCCGA GCCGT GCCGC GCCGG

GCG GCGAA GCGAT GCGAC GCGAG GCGTA GCGTT GCGTC GCGTG GCGCA GCGCT GCGCC GCGCG GCGGA GCGGT GCGGC GCGGG

GGA GGAAA GGAAT GGAAC GGAAG GGATA GGATT GGATC GGATG GGACA GGACT GGACC GGACG GGAGA GGAGT GGAGC GGAGG

GGT GGTAA GGTAT GGTAC GGTAG GGTTA GGTTT GGTTC GGTTG GGTCA GGTCT GGTCC GGTCG GGTGA GGTGT GGTGC GGTGG

GGC GGCAA GGCAT GGCAC GGCAG GGCTA GGCTT GGCTC GGCTG GGCCA GGCCT GGCCC GGCCG GGCGA GGCGT GGCGC GGCGG

GGG GGGAA GGGAT GGGAC GGGAG GGGTA GGGTT GGGTC GGGTG GGGCA GGGCT GGGCC GGGCG GGGGA GGGGT GGGGC GGGGG